Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.603	Snrpd1	small nuclear ribonucleoprotein D1	18		20641
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex | spliceosome assembly | spliceosome complex
Human Homolog	SNRPD1[small nuclear ribonucleoprotein D1 polypeptide 16kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 61 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACACACACC (5) 8.2 0.0082 P8 Cb GC GAGCTTTAGT 1.6 0.0016 P8 Cb GC GGTTTGATTT (4) 1.6 0.0016 Cb medulloblastoma ACTCAATTTC 2.3 0.0023 Cb medulloblastoma GAGCTTTAGT 2.3 0.0023 Cb medulloblastoma GTTTGAATTT (4) 2.3 0.0023 P8 GC+1d culture GTTTGAATTT (4) 2.3 0.0023 P8 GC+1d culture AACACACACC (5) 1.1 0.0011 P8 GC+1d culture ACTCAATTTC 1.1 0.0011 P8 GC+1d culture GGTTTGATTT (4) 1.1 0.0011 P8 GC+1d culture GTCCTGGAAA (8) 1.1 0.0011 P8 GC+SHH+1d culture AACAGAGAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture ACTCAATTTC 1.2 0.0012 P8 GC+SHH+1d culture GGTTTGATTT (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTTGAATTT (4) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AACACACACC (5) 7 0.007 E15 cortex GGTTTGATTT (4) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex GAGCTTTAGT 4.5 0.0045 Hypothalamus GAGCTTTAGT 1.8 0.0018 Hypothalamus GGTTTGATTT (4) 1.8 0.0018 E12.5 retina AACACACACC (5) 1.9 0.0019 E12.5 retina GAGCTTTAGT 1.9 0.0019 E12.5 retina GGTTTGATTT (4) 1.9 0.0019 E14.5 retina GAGCTTTAGT 3.6 0.0036 E14.5 retina AACACACACC (5) 1.8 0.0018 E14.5 retina AACAGAGAAA (3) 1.8 0.0018 E16.5 retina AACAGAGAAA (3) 3.6 0.0036 E16.5 retina ACTCAATTTC 1.8 0.0018 E16.5 retina GAGCTTTAGT 1.8 0.0018 E16.5 retina GTCCTGGAAA (8) 1.8 0.0018 E16.5 retina GTTTGAATTT (4) 1.8 0.0018 E18.5 retina GAGCTTTAGT 3.6 0.0036 E18.5 retina AACAGAGAAA (3) 1.8 0.0018 E18.5 retina GGTTTGATTT (4) 1.8 0.0018 P0.5 retina AACACACACC (5) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina ACTCAATTTC 2 0.002 P0.5 retina GGTTTGATTT (4) 2 0.002 P2.5 retina AACACACACC (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GGTTTGATTT (4) 5.9 0.0059 P4.5 retina AACACACACC (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AACACACACC (5) 1.7 0.0017 P6.5 retina GAGCTTTAGT 1.7 0.0017 P6.5 retina GGTTTGATTT (4) 1.7 0.0017 P10.5 crx- retina AACACACACC (5) 7.4 0.0074 P10.5 crx+ retina AACACACACC (5) 1.9 0.0019 P10.5 crx+ retina GAGCTTTAGT 1.9 0.0019 Adult retinal AACACACACC (5) 7.4 0.0074 Adult retinal AACAGAGAAA (3) 1.9 0.0019 Adult retinal GAGCTTTAGT 1.9 0.0019 Adult retinal GGTTTGATTT (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTCCTGGAAA (8) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AACACACACC (5) 1.9 0.0019 ONL AACAGAGAAA (3) 1.9 0.0019