Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.6221	Capn1	calpain 1	19	19 3.0 cM	12333
Gene Ontology	calcium ion binding | calpain activity | cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | intracellular | proteolysis and peptidolysis
Human Homolog	CAPN1[calpain 1, (mu/I) large subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 22 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CGTACTCTGT (2) 1.6 0.0016 P8 Cb GC GCAGAGACAG (5) 1.6 0.0016 Cb medulloblastoma GAGACCATCG (5) 4.6 0.0046 P8 GC+1d culture GTCTGTGGGG (5) 4.6 0.0046 P8 GC+1d culture TTCCGGTTTT 2.3 0.0023 P8 GC+SHH+1d culture GTCTGTGGGG (5) 5.9 0.0059 P8 GC+SHH+1d culture AACTCATAAT (11) 2.3 0.0023 3T3 fibroblasts CGTACTCTGT (2) 3.5 0.0035 3T3 fibroblasts GCAGAGACAG (5) 3.5 0.0035 Hypothalamus GAGACCATCG (5) 1.8 0.0018 E12.5 retina AACTCATAAT (11) 3.8 0.0038 E14.5 retina AACTCATAAT (11) 3.6 0.0036 E18.5 retina GTCTGTGGGG (5) 1.8 0.0018 P0.5 retina GAGACCATCG (5) 2 0.002 P0.5 retina TTCCGGTTTT 2 0.002 P4.5 retina CGTACTCTGT (2) 2 0.002 P4.5 retina GTCTGTGGGG (5) 2 0.002 P10.5 crx- retina GCAGAGACAG (5) 1.9 0.0019 P10.5 crx+ retina GCAGAGACAG (5) 1.9 0.0019 P10.5 crx+ retina GTCTGTGGGG (5) 1.9 0.0019 Adult retinal GTCTGTGGGG (5) 3.7 0.0037 Adult retinal GCAGAGACAG (5) 1.9 0.0019