Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.687	AA017882	expressed sequence AA017882	12		104711
Mm.687	Rhob	ras homolog gene family, member B	12		11852
Gene Ontology	angiogenesis | apoptosis | cell adhesion | cell cycle | cell growth and/or maintenance | GTP binding | GTPase activity | membrane | negative regulation of cell cycle | nucleus | protein binding | protein transport | Rho protein signal transduction | small GTPase mediated signal transduction | transport
Human Homolog	RHOB[ras homolog gene family, member B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 129 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGCAGAGAAA (5) 31 0.031 P8 Cb GC ACATTTAAAA (10) 24.5 0.0245 P8 Cb GC ACATTTATAA (3) 13.1 0.0131 P8 Cb GC GAACGTACAG (2) 8.2 0.0082 P8 Cb GC ACATTTTTAA (4) 4.9 0.0049 P8 Cb GC ACTTTACAAA (2) 3.3 0.0033 P8 Cb GC CTTGGATGGG (4) 3.3 0.0033 P8 Cb GC TCTGTAACAT (5) 3.3 0.0033 P8 Cb GC AACTGGACTT (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma ACATTTAAAA (10) 6.9 0.0069 Cb medulloblastoma TGCAGAGAAA (5) 6.9 0.0069 Cb medulloblastoma ACATTTATAA (3) 2.3 0.0023 Cb medulloblastoma ACATTTTTAA (4) 2.3 0.0023 Cb medulloblastoma CCCCAGGACA (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGCAGAGAAA (5) 16 0.016 P8 GC+1d culture ACATTTAAAA (10) 10.3 0.0103 P8 GC+1d culture ACATTTTTAA (4) 4.6 0.0046 P8 GC+1d culture AACTGGACTT (3) 2.3 0.0023 P8 GC+1d culture CCCCAGGACA (5) 2.3 0.0023 P8 GC+1d culture CTTGGATGGG (4) 1.1 0.0011 P8 GC+1d culture GAACGTACAG (2) 1.1 0.0011 P8 GC+1d culture GGAGGGGGGG (5) 1.1 0.0011 P8 GC+1d culture TCTGTAACAT (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGCAGAGAAA (5) 18.7 0.0187 P8 GC+SHH+1d culture ACATTTAAAA (10) 10.5 0.0105 P8 GC+SHH+1d culture ACATTTTTAA (4) 4.7 0.0047 P8 GC+SHH+1d culture CCCCAGGACA (5) 4.7 0.0047 P8 GC+SHH+1d culture AACTGGACTT (3) 1.2 0.0012 P8 GC+SHH+1d culture ACATTTATAA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTTGGATGGG (4) 1.2 0.0012 P8 GC+SHH+1d culture GAACGTACAG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCGGCCATCC (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGGGGGGGC (15) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CCCCAGGACA (5) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex ACATTTAAAA (10) 4.9 0.0049 E15 cortex TGCAGAGAAA (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex ATCCTGACAT (2) 22.7 0.0227 P1 cortex CTTGGATGGG (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TGCAGAGAAA (5) 25.4 0.0254 Hypothalamus CCCCAGGACA (5) 5.4 0.0054 Hypothalamus ACATTTAAAA (10) 3.6 0.0036 Hypothalamus GCGGCCATCC (3) 3.6 0.0036 Hypothalamus ACATTTATAA (3) 1.8 0.0018 Hypothalamus ACATTTTTAA (4) 1.8 0.0018 Hypothalamus CTTGGATGGG (4) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TGCAGAGAAA (5) 9.4 0.0094 E12.5 retina ACATTTAAAA (10) 5.6 0.0056 E12.5 retina ACATTTTTAA (4) 3.8 0.0038 E12.5 retina ACTTTACAAA (2) 1.9 0.0019 E12.5 retina AGGGGAGCGG (3) 1.9 0.0019 E12.5 retina GGGGGGGGGC (15) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TGCAGAGAAA (5) 9.1 0.0091 E14.5 retina ACATTTAAAA (10) 5.5 0.0055 E14.5 retina AGGGGAGCGG (3) 3.6 0.0036 E14.5 retina ACATTTATAA (3) 1.8 0.0018 E14.5 retina ACATTTTTAA (4) 1.8 0.0018 E14.5 retina CCCCAGGACA (5) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGCAGAGAAA (5) 7.2 0.0072 E16.5 retina ATCCTGACAT (2) 5.4 0.0054 E16.5 retina CCCCAGGACA (5) 5.4 0.0054 E16.5 retina ACATTTAAAA (10) 3.6 0.0036 E16.5 retina ACATTTATAA (3) 1.8 0.0018 E16.5 retina ACATTTTTAA (4) 1.8 0.0018 E16.5 retina GAACGTACAG (2) 1.8 0.0018 E16.5 retina GCGGCCATCC (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGCAGAGAAA (5) 16.4 0.0164 E18.5 retina ACATTTAAAA (10) 9.1 0.0091 E18.5 retina CCCCAGGACA (5) 3.6 0.0036 E18.5 retina ACATTTATAA (3) 1.8 0.0018 E18.5 retina ACATTTTTAA (4) 1.8 0.0018 E18.5 retina ATCCTGACAT (2) 1.8 0.0018 E18.5 retina GGGGGGGGGC (15) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AACTGGACTT (3) 2 0.002 P0.5 retina CCCCAGGACA (5) 2 0.002 P0.5 retina GGAGGGGGGG (5) 2 0.002 P0.5 retina TGCAGAGAAA (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGCAGAGAAA (5) 7 0.007 P2.5 retina CCCCAGGACA (5) 5.3 0.0053 P2.5 retina ACATTTAAAA (10) 1.8 0.0018 P2.5 retina ACATTTATAA (3) 1.8 0.0018 P2.5 retina AGGGGAGCGG (3) 1.8 0.0018 P2.5 retina ATCCTGACAT (2) 1.8 0.0018 P2.5 retina GGAGGGGGGG (5) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGCAGAGAAA (5) 9.9 0.0099 P4.5 retina ACATTTAAAA (10) 4 0.004 P4.5 retina CCCCAGGACA (5) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGCAGAGAAA (5) 6.7 0.0067 P6.5 retina CCCCAGGACA (5) 3.3 0.0033 P6.5 retina ACATTTAAAA (10) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina ACATTTATAA (3) 5.6 0.0056 P10.5 crx- retina AACTGGACTT (3) 3.7 0.0037 P10.5 crx- retina ACATTTAAAA (10) 3.7 0.0037 P10.5 crx- retina CCCCAGGACA (5) 3.7 0.0037 P10.5 crx- retina GAACGTACAG (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGCAGAGAAA (5) 7.7 0.0077 P10.5 crx+ retina ACATTTTTAA (4) 5.8 0.0058 P10.5 crx+ retina ACATTTAAAA (10) 3.8 0.0038 P10.5 crx+ retina CCCCAGGACA (5) 1.9 0.0019 P10.5 crx+ retina CTTGGATGGG (4) 1.9 0.0019 P10.5 crx+ retina GCGGCCATCC (3) 1.9 0.0019 P10.5 crx+ retina TCTGTAACAT (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CCCCAGGACA (5) 5.6 0.0056 Adult retinal ATCCTGACAT (2) 3.7 0.0037 Adult retinal TGCAGAGAAA (5) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL ACATTTAAAA (10) 3.8 0.0038 ONL ACATTTTTAA (4) 3.8 0.0038 ONL CCCCAGGACA (5) 3.8 0.0038 ONL GGGGGGGGGC (15) 1.9 0.0019 ONL TGCAGAGAAA (5) 1.9 0.0019