Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.716	Cpsf2	cleavage and polyadenylation specific factor 2	12		51786
Gene Ontology	mRNA processing | nucleus | RNA binding
Human Homolog	CPSF2[cleavage and polyadenylation specific factor 2, 100kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC ATTCTTTATA (4) 4.9 0.0049 P8 Cb GC TGCAAGGCCC (5) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AGAGCAGAGA (7) 1.6 0.0016 P8 Cb GC AGATCCAACT (5) 1.6 0.0016 P8 Cb GC CACTGGTTCC (8) 1.6 0.0016 P8 Cb GC TGTGAAGCCC (3) 1.6 0.0016 P8 Cb GC TGTGAGGCCC (2) 1.6 0.0016 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma TGCAAGGCCC (5) 11.6 0.0116 Cb medulloblastoma ATTCTTTATA (4) 6.9 0.0069 Cb medulloblastoma TAGCAAAAAA (3) 4.6 0.0046 Cb medulloblastoma AGATCCAACT (5) 2.3 0.0023 Cb medulloblastoma TCCACCAGAT (7) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture ATTCTTTATA (4) 16 0.016 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TGCAAGGCCC (5) 8 0.008 P8 GC+1d culture AGAGCAGAGA (7) 2.3 0.0023 P8 GC+1d culture TGTGAGGCCC (2) 2.3 0.0023 P8 GC+1d culture GTTAGAGCCT 1.1 0.0011 P8 GC+1d culture TAGCAAAAAA (3) 1.1 0.0011 P8 GC+1d culture TGTGAAGCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture TGTGAGGCCC (2) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TAGCAAAAAA (3) 4.7 0.0047 P8 GC+SHH+1d culture TGCAAGGCCC (5) 4.7 0.0047 P8 GC+SHH+1d culture AGAGCAGAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture ATTCTTTATA (4) 1.2 0.0012 3T3 fibroblasts TGTGAAGCCC (3) 28 0.028 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts TGCAAGGCCC (5) 7 0.007 3T3 fibroblasts AGAGCAGAGA (7) 3.5 0.0035 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex TGCAAGGCCC (5) 9.9 0.0099 E15 cortex AGATCCAACT (5) 4.9 0.0049 E15 cortex GTTAGAGCCT 4.9 0.0049 E15 cortex TCCACCAGAT (7) 4.9 0.0049 E15 cortex TGTGAGGCCC (2) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex TGCAAGGCCC (5) 13.6 0.0136 P1 cortex ATTCTTTATA (4) 9.1 0.0091 P1 cortex AGAGCAGAGA (7) 4.5 0.0045 P1 cortex AGATCCAACT (5) 4.5 0.0045 P1 cortex TGTGAAGCCC (3) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus TGCAAGGCCC (5) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus AGAGCAGAGA (7) 3.6 0.0036 Hypothalamus AGATCCAACT (5) 3.6 0.0036 Hypothalamus TGTGAGGCCC (2) 1.8 0.0018 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ATTCTTTATA (4) 5.6 0.0056 E12.5 retina TGCAAGGCCC (5) 1.9 0.0019 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina ATTCTTTATA (4) 14.6 0.0146 E14.5 retina TGCAAGGCCC (5) 9.1 0.0091 E14.5 retina AGATCCAACT (5) 5.5 0.0055 E14.5 retina CACTGGTTCC (8) 1.8 0.0018 E14.5 retina GTTAGAGCCT 1.8 0.0018 E14.5 retina TAGCAAAAAA (3) 1.8 0.0018 E14.5 retina TGTGAAGCCC (3) 1.8 0.0018 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina ATTCTTTATA (4) 14.5 0.0145 E16.5 retina TGCAAGGCCC (5) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TGTGAAGCCC (3) 1.8 0.0018 E16.5 retina TGTGAGGCCC (2) 1.8 0.0018 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TGCAAGGCCC (5) 7.3 0.0073 E18.5 retina TAGCAAAAAA (3) 3.6 0.0036 E18.5 retina ATTCTTTATA (4) 1.8 0.0018 E18.5 retina TGTGAGGCCC (2) 1.8 0.0018 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TGCAAGGCCC (5) 5.9 0.0059 P0.5 retina TGTGAAGCCC (3) 5.9 0.0059 P0.5 retina AGAGCAGAGA (7) 3.9 0.0039 P0.5 retina TGTGAGGCCC (2) 3.9 0.0039 P0.5 retina AGATCCAACT (5) 2 0.002 P0.5 retina ATTCTTTATA (4) 2 0.002 P0.5 retina TCCACCAGAT (7) 2 0.002 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina ATTCTTTATA (4) 7 0.007 P2.5 retina TGCAAGGCCC (5) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TGTGAAGCCC (3) 3.5 0.0035 P2.5 retina TGTGAGGCCC (2) 3.5 0.0035 P2.5 retina AGAGCAGAGA (7) 1.8 0.0018 P2.5 retina TAGCAAAAAA (3) 1.8 0.0018 P2.5 retina TCCACCAGAT (7) 1.8 0.0018 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TGCAAGGCCC (5) 7.9 0.0079 P4.5 retina AGAGCAGAGA (7) 2 0.002 P4.5 retina ATTCTTTATA (4) 2 0.002 P4.5 retina TGTGAAGCCC (3) 2 0.002 P4.5 retina TGTGAGGCCC (2) 2 0.002 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina TGCAAGGCCC (5) 10 0.01 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TGTGAAGCCC (3) 3.3 0.0033 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina ATTCTTTATA (4) 7.4 0.0074 P10.5 crx- retina TGCAAGGCCC (5) 7.4 0.0074 P10.5 crx- retina AGATCCAACT (5) 1.9 0.0019 P10.5 crx- retina CACTGGTTCC (8) 1.9 0.0019 P10.5 crx- retina TAGCAAAAAA (3) 1.9 0.0019 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina TGCAAGGCCC (5) 5.8 0.0058 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AGAGCAGAGA (7) 1.9 0.0019 P10.5 crx+ retina AGATCCAACT (5) 1.9 0.0019 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal TGCAAGGCCC (5) 11.1 0.0111 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal TCCACCAGAT (7) 5.6 0.0056 Adult retinal AGATCCAACT (5) 3.7 0.0037 Adult retinal AGAGCAGAGA (7) 1.9 0.0019 Adult retinal ATTCTTTATA (4) 1.9 0.0019 Adult retinal TAGCAAAAAA (3) 1.9 0.0019 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL TGCAAGGCCC (5) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL ATTCTTTATA (4) 1.9 0.0019