Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7723	Pabpn1	poly(A) binding protein, nuclear 1	14	14 19.5 cM	54196
Gene Ontology	mRNA polyadenylation | mRNA processing | nucleic acid binding | nucleus | poly(A) binding | RNA binding
Human Homolog	PABPN1[poly(A) binding protein, nuclear 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTATTCCCCT (3) 27.7 0.0277 P8 Cb GC ATGTCGCTCT 3.3 0.0033 P8 Cb GC GCTGTGGTTA (5) 1.6 0.0016 P8 Cb GC GTCAAGCCCC (2) 1.6 0.0016 Cb medulloblastoma GGCTGGTGGG (4) 25.4 0.0254 Cb medulloblastoma GTATTCCCCT (3) 9.2 0.0092 Cb medulloblastoma GTTTCCCTTC (6) 9.2 0.0092 Cb medulloblastoma ATGTCGCTCT 2.3 0.0023 P8 GC+1d culture GTATTCCCCT (3) 5.7 0.0057 P8 GC+1d culture GACACATCTC (3) 3.4 0.0034 P8 GC+1d culture GGCTGGTGGG (4) 2.3 0.0023 P8 GC+1d culture GTTTCCCTTC (6) 1.1 0.0011 P8 GC+SHH+1d culture GTATTCCCCT (3) 7 0.007 P8 GC+SHH+1d culture GGCTGGTGGG (4) 5.9 0.0059 P8 GC+SHH+1d culture GTTTCCCTTC (6) 2.3 0.0023 P8 GC+SHH+1d culture ATGTCGCTCT 1.2 0.0012 3T3 fibroblasts GGCTGGTGGG (4) 10.5 0.0105 3T3 fibroblasts GTATTCCCCT (3) 7 0.007 3T3 fibroblasts GGGAGGGTCT (2) 3.5 0.0035 E15 cortex GTATTCCCCT (3) 9.9 0.0099 E15 cortex GTCAAGCCCC (2) 9.9 0.0099 E15 cortex ATGTCGCTCT 4.9 0.0049 P1 cortex GTATTCCCCT (3) 50 0.05 P1 cortex GGCTGGTGGG (4) 4.5 0.0045 Hypothalamus GTATTCCCCT (3) 18.1 0.0181 Hypothalamus GGCTGGTGGG (4) 14.5 0.0145 Hypothalamus GACACATCTC (3) 9.1 0.0091 Hypothalamus ATGTCGCTCT 1.8 0.0018 Hypothalamus GCTGTGGTTA (5) 1.8 0.0018 Hypothalamus GTTTCCCTTC (6) 1.8 0.0018 E12.5 retina GTATTCCCCT (3) 26.3 0.0263 E12.5 retina GTTTCCCTTC (6) 5.6 0.0056 E12.5 retina GCTGTGGTTA (5) 3.8 0.0038 E12.5 retina GACACATCTC (3) 1.9 0.0019 E12.5 retina GTCAAGCCCC (2) 1.9 0.0019 E14.5 retina GTATTCCCCT (3) 34.6 0.0346 E14.5 retina ATGTCGCTCT 5.5 0.0055 E14.5 retina GTTTCCCTTC (6) 3.6 0.0036 E14.5 retina GGCCCGCAAC 1.8 0.0018 E14.5 retina GGCTGGTGGG (4) 1.8 0.0018 E14.5 retina GGGAGGGTCT (2) 1.8 0.0018 E16.5 retina GTATTCCCCT (3) 52.5 0.0525 E16.5 retina ATGTCGCTCT 9.1 0.0091 E16.5 retina GCTGTGGTTA (5) 1.8 0.0018 E16.5 retina GGCCCGCAAC 1.8 0.0018 E16.5 retina GGCTGGTGGG (4) 1.8 0.0018 E16.5 retina GTTTCCCTTC (6) 1.8 0.0018 E18.5 retina GTATTCCCCT (3) 40 0.04 E18.5 retina GTTTCCCTTC (6) 5.5 0.0055 E18.5 retina GGCTGGTGGG (4) 3.6 0.0036 E18.5 retina ATGTCGCTCT 1.8 0.0018 E18.5 retina GTCAAGCCCC (2) 1.8 0.0018 P0.5 retina GTATTCCCCT (3) 17.7 0.0177 P0.5 retina ATGTCGCTCT 3.9 0.0039 P0.5 retina GCTGTGGTTA (5) 3.9 0.0039 P0.5 retina GTTTCCCTTC (6) 2 0.002 P2.5 retina GTATTCCCCT (3) 26.4 0.0264 P2.5 retina GACACATCTC (3) 7 0.007 P2.5 retina GGCTGGTGGG (4) 5.3 0.0053 P2.5 retina GTTTCCCTTC (6) 5.3 0.0053 P2.5 retina ATGTCGCTCT 1.8 0.0018 P2.5 retina GCTGTGGTTA (5) 1.8 0.0018 P4.5 retina GTATTCCCCT (3) 31.7 0.0317 P4.5 retina GACACATCTC (3) 5.9 0.0059 P4.5 retina ATGTCGCTCT 4 0.004 P4.5 retina GTTTCCCTTC (6) 4 0.004 P4.5 retina GCTGTGGTTA (5) 2 0.002 P4.5 retina GGCTGGTGGG (4) 2 0.002 P6.5 retina GTATTCCCCT (3) 26.7 0.0267 P6.5 retina GCTGTGGTTA (5) 5 0.005 P6.5 retina ATGTCGCTCT 1.7 0.0017 P6.5 retina GACACATCTC (3) 1.7 0.0017 P6.5 retina GGCTGGTGGG (4) 1.7 0.0017 P6.5 retina GGGAGGGTCT (2) 1.7 0.0017 P6.5 retina GTTTCCCTTC (6) 1.7 0.0017 P10.5 crx- retina GTATTCCCCT (3) 16.7 0.0167 P10.5 crx- retina GGCTGGTGGG (4) 5.6 0.0056 P10.5 crx- retina ATGTCGCTCT 1.9 0.0019 P10.5 crx+ retina GTATTCCCCT (3) 23.1 0.0231 P10.5 crx+ retina GGCTGGTGGG (4) 15.4 0.0154 P10.5 crx+ retina GCTGTGGTTA (5) 7.7 0.0077 P10.5 crx+ retina GTTTCCCTTC (6) 5.8 0.0058 P10.5 crx+ retina GACACATCTC (3) 3.8 0.0038 P10.5 crx+ retina GCTGGTGGTC (3) 1.9 0.0019 P10.5 crx+ retina GGCCCGCAAC 1.9 0.0019 Adult retinal GTATTCCCCT (3) 9.3 0.0093 Adult retinal ATGTCGCTCT 3.7 0.0037 Adult retinal GACACATCTC (3) 3.7 0.0037 Adult retinal GGCTGGTGGG (4) 1.9 0.0019 Adult retinal GTTTCCCTTC (6) 1.9 0.0019 ONL GTATTCCCCT (3) 17.2 0.0172 ONL GCTGGTGGTC (3) 3.8 0.0038 ONL GCTGTGGTTA (5) 3.8 0.0038 ONL GACACATCTC (3) 1.9 0.0019