Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.80484	Usp40	ubiquitin specific protease 40	1		227334
Gene Ontology	cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP40[ubiquitin specific protease 40]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC CCTGTAATCC (34) 6.5 0.0065 P8 Cb GC CACACAGTGG (6) 1.6 0.0016 P8 Cb GC TGGTTTCTGG (10) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TTGGGGAACC (5) 18.5 0.0185 Cb medulloblastoma CCTGTAATCC (34) 11.6 0.0116 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TTGGGGAACC (5) 4.6 0.0046 P8 GC+1d culture TGGTTTCTGG (10) 2.3 0.0023 P8 GC+1d culture CACACAGTGG (6) 1.1 0.0011 P8 GC+1d culture CCTGTAATCC (34) 1.1 0.0011 P8 GC+1d culture TCTGCTGAAG (3) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture CCTGTAATCC (34) 4.7 0.0047 P8 GC+SHH+1d culture TCTGCTGAAG (3) 3.5 0.0035 P8 GC+SHH+1d culture TGGTTTCTGG (10) 3.5 0.0035 P8 GC+SHH+1d culture TTGGGGAACC (5) 2.3 0.0023 P8 GC+SHH+1d culture CACACAGTGG (6) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CACACAGTGG (6) 10.5 0.0105 3T3 fibroblasts CCTGTAATCC (34) 10.5 0.0105 3T3 fibroblasts TCTGCTGAAG (3) 3.5 0.0035 3T3 fibroblasts TGGTTTCTGG (10) 3.5 0.0035 3T3 fibroblasts TTGGGGAACC (5) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCTGTAATCC (34) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex CCTGTAATCC (34) 13.6 0.0136 P1 cortex CACACAGTGG (6) 4.5 0.0045 P1 cortex TGGTTTCTGG (10) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TTGGGGAACC (5) 12.7 0.0127 Hypothalamus CCTGTAATCC (34) 5.4 0.0054 Hypothalamus TGGTTTCTGG (10) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina CACACAGTGG (6) 5.6 0.0056 E12.5 retina CCTGTAATCC (34) 3.8 0.0038 E12.5 retina TGGTTTCTGG (10) 3.8 0.0038 E12.5 retina TTGGGGAACC (5) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TGGTTTCTGG (10) 9.1 0.0091 E14.5 retina CCTGTAATCC (34) 5.5 0.0055 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TGGTTTCTGG (10) 18.1 0.0181 E16.5 retina CCTGTAATCC (34) 3.6 0.0036 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina CCTGTAATCC (34) 1.8 0.0018 E18.5 retina TGGTTTCTGG (10) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTGTAATCC (34) 3.9 0.0039 P0.5 retina TCTGCTGAAG (3) 3.9 0.0039 P0.5 retina TGGTTTCTGG (10) 3.9 0.0039 P0.5 retina TTGGGGAACC (5) 3.9 0.0039 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TGGTTTCTGG (10) 7 0.007 P2.5 retina CCTGTAATCC (34) 3.5 0.0035 P2.5 retina CACACAGTGG (6) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TTGGGGAACC (5) 9.9 0.0099 P4.5 retina CCTGTAATCC (34) 5.9 0.0059 P4.5 retina TGGTTTCTGG (10) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TTGGGGAACC (5) 3.3 0.0033 P6.5 retina CCTGTAATCC (34) 1.7 0.0017 P6.5 retina TCTGCTGAAG (3) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TTGGGGAACC (5) 13 0.013 P10.5 crx- retina TCTGCTGAAG (3) 5.6 0.0056 P10.5 crx- retina CCTGTAATCC (34) 3.7 0.0037 P10.5 crx- retina TGGTTTCTGG (10) 3.7 0.0037 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TTGGGGAACC (5) 21.1 0.0211 P10.5 crx+ retina CCTGTAATCC (34) 3.8 0.0038 P10.5 crx+ retina TGGTTTCTGG (10) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TTGGGGAACC (5) 25.9 0.0259 Adult retinal CCTGTAATCC (34) 3.7 0.0037 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TGGTTTCTGG (10) 7.7 0.0077 ONL TTGGGGAACC (5) 5.7 0.0057 ONL CCTGTAATCC (34) 3.8 0.0038