Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8137	Chd1	chromodomain helicase DNA binding protein 1	17	17 7.2 cM	12648
Gene Ontology	ATP binding | ATP dependent helicase activity | chromatin | chromatin assembly/disassembly | chromatin binding | DNA binding | helicase activity | hydrolase activity | nucleic acid binding | nucleus
Human Homolog	CHD1[chromodomain helicase DNA binding protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATGGATGCA (5) 13.1 0.0131 P8 Cb GC CTCATTCTGC (2) 1.6 0.0016 P8 Cb GC GGAGACAGAA (3) 1.6 0.0016 P8 GC+1d culture AATGGATGCA (5) 20.5 0.0205 P8 GC+1d culture GAGTAGCTGT (3) 1.1 0.0011 P8 GC+1d culture TTTCAGGAAG (2) 1.1 0.0011 P8 GC+SHH+1d culture AATGGATGCA (5) 19.9 0.0199 P8 GC+SHH+1d culture AAAGGGAAAA (10) 2.3 0.0023 P8 GC+SHH+1d culture ATCACAGGTC 1.2 0.0012 P8 GC+SHH+1d culture GTGCTTCTCC (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGGCAATAA 1.2 0.0012 E15 cortex AATGGATGCA (5) 14.8 0.0148 E15 cortex ATCACAGGTC 4.9 0.0049 E15 cortex TTTCAGGAAG (2) 4.9 0.0049 P1 cortex AATGGATGCA (5) 13.6 0.0136 P1 cortex TGGGCAATAA 9.1 0.0091 Hypothalamus AATGGATGCA (5) 9.1 0.0091 Hypothalamus GTGCTTCTCC (2) 3.6 0.0036 Hypothalamus GAGTAGCTGT (3) 1.8 0.0018 E12.5 retina AATGGATGCA (5) 18.8 0.0188 E12.5 retina AAAGGGAAAA (10) 1.9 0.0019 E12.5 retina TGGGCAATAA 1.9 0.0019 E14.5 retina AATGGATGCA (5) 5.5 0.0055 E14.5 retina GTGCTTCTCC (2) 1.8 0.0018 E16.5 retina AATGGATGCA (5) 10.9 0.0109 E16.5 retina TGGGCAATAA 3.6 0.0036 E16.5 retina CTCATTCTGC (2) 1.8 0.0018 E18.5 retina AATGGATGCA (5) 7.3 0.0073 E18.5 retina AAAGGGAAAA (10) 1.8 0.0018 P0.5 retina AATGGATGCA (5) 13.7 0.0137 P0.5 retina AAAGGGAAAA (10) 2 0.002 P0.5 retina CTCATTCTGC (2) 2 0.002 P0.5 retina GGAGACAGAA (3) 2 0.002 P0.5 retina TGGGCAATAA 2 0.002 P0.5 retina TTTCAGGAAG (2) 2 0.002 P2.5 retina AATGGATGCA (5) 10.6 0.0106 P2.5 retina ATCACAGGTC 1.8 0.0018 P2.5 retina GGAGACAGAA (3) 1.8 0.0018 P2.5 retina TGGGCAATAA 1.8 0.0018 P4.5 retina AATGGATGCA (5) 15.9 0.0159 P4.5 retina TTTCAGGAAG (2) 4 0.004 P4.5 retina GTGCTTCTCC (2) 2 0.002 P4.5 retina TGGGCAATAA 2 0.002 P6.5 retina AATGGATGCA (5) 13.3 0.0133 P6.5 retina AAAGGGAAAA (10) 1.7 0.0017 P6.5 retina CTCATTCTGC (2) 1.7 0.0017 P6.5 retina GGAGACAGAA (3) 1.7 0.0017 P6.5 retina TGGGCAATAA 1.7 0.0017 P10.5 crx- retina AATGGATGCA (5) 5.6 0.0056 P10.5 crx+ retina AATGGATGCA (5) 13.5 0.0135 P10.5 crx+ retina TGGGCAATAA 3.8 0.0038 P10.5 crx+ retina GGAGACAGAA (3) 1.9 0.0019 Adult retinal AATGGATGCA (5) 7.4 0.0074 Adult retinal CTCATTCTGC (2) 1.9 0.0019 Adult retinal GAGTAGCTGT (3) 1.9 0.0019 ONL AATGGATGCA (5) 5.7 0.0057 ONL GGAGACAGAA (3) 1.9 0.0019 ONL TGGGCAATAA 1.9 0.0019 ONL TTTCAGGAAG (2) 1.9 0.0019