Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8256	Khdrbs1	KH domain containing, RNA binding, signal transduction associated 1	4		20218
Gene Ontology	membrane | negative regulation of transcription | nucleic acid binding | nucleus | protein binding | regulation of RNA-nucleus export | transcriptional repressor activity | transport | transporter activity
Human Homolog	KHDRBS1[KH domain containing, RNA binding, signal transduction associated 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 121 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTAAGTCTG (3) 55.5 0.0555 P8 Cb GC CTAGTGTTGA (3) 9.8 0.0098 P8 Cb GC TACCATTTAA (9) 8.2 0.0082 P8 Cb GC TAGCATTTAA 3.3 0.0033 P8 Cb GC AAGCTGAAAA (5) 1.6 0.0016 P8 Cb GC AAGCTGAAGA (4) 1.6 0.0016 P8 Cb GC AAGCTGAGAG (7) 1.6 0.0016 P8 Cb GC GTGGCACTAC 1.6 0.0016 P8 Cb GC TGGCTACTGG (7) 1.6 0.0016 Cb medulloblastoma TGTAAGTCTG (3) 25.4 0.0254 Cb medulloblastoma TACCATTTAA (9) 13.9 0.0139 Cb medulloblastoma CTAGTGTTGA (3) 2.3 0.0023 P8 GC+1d culture TGTAAGTCTG (3) 57.1 0.0571 P8 GC+1d culture TACCATTTAA (9) 6.8 0.0068 P8 GC+1d culture TGGCTACTGG (7) 3.4 0.0034 P8 GC+1d culture AAGCTGAGAG (7) 1.1 0.0011 P8 GC+1d culture GGGAGCTCCA (2) 1.1 0.0011 P8 GC+1d culture GTGGCACTAC 1.1 0.0011 P8 GC+1d culture TTAGTGGTTT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGTAAGTCTG (3) 43.3 0.0433 P8 GC+SHH+1d culture TACCATTTAA (9) 10.5 0.0105 P8 GC+SHH+1d culture TGGCTACTGG (7) 9.4 0.0094 P8 GC+SHH+1d culture GAAAAGATGG (2) 2.3 0.0023 P8 GC+SHH+1d culture ACTGAAAACG (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGCTCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTGGCACTAC 1.2 0.0012 3T3 fibroblasts GGGAGCTCCA (2) 10.5 0.0105 3T3 fibroblasts AAGCTGAGAG (7) 3.5 0.0035 3T3 fibroblasts CTAGTGTTGA (3) 3.5 0.0035 3T3 fibroblasts TGGCTACTGG (7) 3.5 0.0035 3T3 fibroblasts TGTAAGTCTG (3) 3.5 0.0035 E15 cortex TGTAAGTCTG (3) 44.5 0.0445 E15 cortex GGGAGCTCCA (2) 9.9 0.0099 E15 cortex CTAGTGTTGA (3) 4.9 0.0049 E15 cortex TACCATTTAA (9) 4.9 0.0049 P1 cortex CTAGTGTTGA (3) 18.2 0.0182 P1 cortex TGTAAGTCTG (3) 9.1 0.0091 P1 cortex AAGCTGAGAG (7) 4.5 0.0045 P1 cortex GAAAAGATGG (2) 4.5 0.0045 P1 cortex TTAGTGGTTT (2) 4.5 0.0045 Hypothalamus TACCATTTAA (9) 14.5 0.0145 Hypothalamus TGTAAGTCTG (3) 5.4 0.0054 Hypothalamus TTAGTGGTTT (2) 3.6 0.0036 Hypothalamus ACTGAAAACG (2) 1.8 0.0018 E12.5 retina TGTAAGTCTG (3) 26.3 0.0263 E12.5 retina GGGAGCTCCA (2) 3.8 0.0038 E12.5 retina TACCATTTAA (9) 3.8 0.0038 E12.5 retina TAGCATTTAA 3.8 0.0038 E12.5 retina AAAACTCACC (5) 1.9 0.0019 E12.5 retina AAGCTGAAGA (4) 1.9 0.0019 E12.5 retina ACTGAAAACG (2) 1.9 0.0019 E12.5 retina CTAGTGTTGA (3) 1.9 0.0019 E12.5 retina TGGCTACTGG (7) 1.9 0.0019 E12.5 retina TTAGTGGTTT (2) 1.9 0.0019 E14.5 retina TGTAAGTCTG (3) 23.7 0.0237 E14.5 retina ACTGAAAACG (2) 5.5 0.0055 E14.5 retina CTAGTGTTGA (3) 5.5 0.0055 E14.5 retina TAGCATTTAA 5.5 0.0055 E14.5 retina TACCATTTAA (9) 3.6 0.0036 E14.5 retina AAGCTGAAAA (5) 1.8 0.0018 E14.5 retina GAAAAGATGG (2) 1.8 0.0018 E14.5 retina TGGCTACTGG (7) 1.8 0.0018 E14.5 retina TTAGTGGTTT (2) 1.8 0.0018 E16.5 retina TGTAAGTCTG (3) 19.9 0.0199 E16.5 retina TGGCTACTGG (7) 7.2 0.0072 E16.5 retina TACCATTTAA (9) 3.6 0.0036 E16.5 retina CTAGTGTTGA (3) 1.8 0.0018 E18.5 retina TGTAAGTCTG (3) 25.5 0.0255 E18.5 retina TACCATTTAA (9) 3.6 0.0036 E18.5 retina TGGCTACTGG (7) 3.6 0.0036 E18.5 retina CTAGTGTTGA (3) 1.8 0.0018 E18.5 retina GTGGCACTAC 1.8 0.0018 P0.5 retina TGTAAGTCTG (3) 15.7 0.0157 P0.5 retina CTAGTGTTGA (3) 5.9 0.0059 P0.5 retina TGGCTACTGG (7) 5.9 0.0059 P0.5 retina GAAAAGATGG (2) 3.9 0.0039 P0.5 retina GGGAGCTCCA (2) 3.9 0.0039 P0.5 retina AAAACTCACC (5) 2 0.002 P0.5 retina TAGCATTTAA 2 0.002 P2.5 retina TGTAAGTCTG (3) 29.9 0.0299 P2.5 retina TACCATTTAA (9) 8.8 0.0088 P2.5 retina CTAGTGTTGA (3) 3.5 0.0035 P2.5 retina GAAAAGATGG (2) 3.5 0.0035 P2.5 retina ACTGAAAACG (2) 1.8 0.0018 P2.5 retina TAGCATTTAA 1.8 0.0018 P4.5 retina TGTAAGTCTG (3) 27.7 0.0277 P4.5 retina TACCATTTAA (9) 15.9 0.0159 P4.5 retina CTAGTGTTGA (3) 4 0.004 P4.5 retina GAAAAGATGG (2) 4 0.004 P4.5 retina AAGCTGAAGA (4) 2 0.002 P6.5 retina TGTAAGTCTG (3) 15 0.015 P6.5 retina CTAGTGTTGA (3) 5 0.005 P6.5 retina TACCATTTAA (9) 3.3 0.0033 P6.5 retina AAGCTGAGAG (7) 1.7 0.0017 P6.5 retina ACTGAAAACG (2) 1.7 0.0017 P6.5 retina GTGGCACTAC 1.7 0.0017 P10.5 crx- retina TGTAAGTCTG (3) 31.6 0.0316 P10.5 crx- retina TACCATTTAA (9) 3.7 0.0037 P10.5 crx- retina AAAACTCACC (5) 1.9 0.0019 P10.5 crx- retina AAACTGAAAG (13) 1.9 0.0019 P10.5 crx- retina ACTGAAAACG (2) 1.9 0.0019 P10.5 crx- retina GGGAGCTCCA (2) 1.9 0.0019 P10.5 crx- retina TAGCATTTAA 1.9 0.0019 P10.5 crx+ retina TGTAAGTCTG (3) 15.4 0.0154 P10.5 crx+ retina TACCATTTAA (9) 11.5 0.0115 P10.5 crx+ retina AAGCTGAAAA (5) 1.9 0.0019 P10.5 crx+ retina ACTGAAAACG (2) 1.9 0.0019 P10.5 crx+ retina CTAGTGTTGA (3) 1.9 0.0019 P10.5 crx+ retina GGGAGCTCCA (2) 1.9 0.0019 Adult retinal TGTAAGTCTG (3) 11.1 0.0111 Adult retinal TACCATTTAA (9) 3.7 0.0037 Adult retinal AAACTGAAAG (13) 1.9 0.0019 Adult retinal TTAGTGGTTT (2) 1.9 0.0019 ONL TGTAAGTCTG (3) 7.7 0.0077 ONL AAACTGAAAG (13) 1.9 0.0019 ONL AAGCTGAAAA (5) 1.9 0.0019 ONL AAGCTGAGAG (7) 1.9 0.0019 ONL GAAAAGATGG (2) 1.9 0.0019 ONL GGGAGCTCCA (2) 1.9 0.0019 ONL TAGCATTTAA 1.9 0.0019 ONL TGGCTACTGG (7) 1.9 0.0019