Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.831	Ssr4	signal sequence receptor, delta	X	X 29.5 cM	20832
Gene Ontology	kinase activity | receptor activity
Human Homolog	SSR4[signal sequence receptor, delta (translocon-associated protein delta)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC AGTACATTCA (2) 4.9 0.0049 P8 Cb GC CGGGCACCTA 4.9 0.0049 P8 Cb GC AGTACATTTC (2) 3.3 0.0033 P8 Cb GC AAACCACACA (10) 1.6 0.0016 P8 Cb GC TCAAATAGTG (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma AGTACATTCA (2) 20.8 0.0208 Cb medulloblastoma CGGGCACCTA 4.6 0.0046 Cb medulloblastoma AAGTAAAAAA (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture AGTACATTCA (2) 3.4 0.0034 P8 GC+1d culture CGGGCACCTA 2.3 0.0023 P8 GC+1d culture AAGTAAAAAA (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture AGTACATTCA (2) 8.2 0.0082 P8 GC+SHH+1d culture AAGTAAAAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture AGTACAAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture AGTACATTTC (2) 1.2 0.0012 P8 GC+SHH+1d culture CGGGCACCTA 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CGGGCACCTA 7 0.007 3T3 fibroblasts AGTACATTCA (2) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex CGGGCACCTA 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CGGGCACCTA 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus AGTACATTCA (2) 10.9 0.0109 Hypothalamus TCAAATAGTG (3) 5.4 0.0054 Hypothalamus AAGTAAAAAA (5) 1.8 0.0018 Hypothalamus CGGGCACCTA 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina AGTACATTCA (2) 9.4 0.0094 E12.5 retina AAACCACACA (10) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina AAACCACACA (10) 1.8 0.0018 E14.5 retina AGTACATTCA (2) 1.8 0.0018 E14.5 retina TCAAATAGTG (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina AGTACATTCA (2) 3.6 0.0036 E16.5 retina TGCCATTTTA (3) 3.6 0.0036 E16.5 retina AAACCACACA (10) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CGGGCACCTA 1.8 0.0018 E16.5 retina TCAAATAGTG (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina AGTACATTCA (2) 7.3 0.0073 E18.5 retina AAGTAAAAAA (5) 5.5 0.0055 E18.5 retina AGTACAAAAA (3) 3.6 0.0036 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGTACATTCA (2) 17.7 0.0177 P0.5 retina ATTACGCCAA (233) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina AGTACATTCA (2) 5.3 0.0053 P2.5 retina AAGTAAAAAA (5) 1.8 0.0018 P2.5 retina TCAAATAGTG (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina AGTACATTCA (2) 7.9 0.0079 P4.5 retina AAACCACACA (10) 2 0.002 P4.5 retina AGTACATTTC (2) 2 0.002 P4.5 retina CGGGCACCTA 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina AGTACATTCA (2) 15 0.015 P6.5 retina AAACCACACA (10) 1.7 0.0017 P6.5 retina CGGGCACCTA 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina CGGGCACCTA 5.6 0.0056 P10.5 crx- retina AGTACATTCA (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina AGTACATTCA (2) 3.8 0.0038 P10.5 crx+ retina CGGGCACCTA 3.8 0.0038 P10.5 crx+ retina TCAAATAGTG (3) 1.9 0.0019 P10.5 crx+ retina TGCCATTTTA (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CGGGCACCTA 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL AGTACATTCA (2) 1.9 0.0019 ONL CGGGCACCTA 1.9 0.0019