Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.998	Psen1	presenilin 1	12	12 37.0 cM	19164
Gene Ontology	apoptosis | blood vessel development | endoplasmic reticulum | Golgi apparatus | heart development | integral to membrane | intracellular signaling cascade | membrane | neuronal migration | nucleus | positive regulation of protein kinase activity | protein binding
Human Homolog	PSEN1[presenilin 1 (Alzheimer disease 3)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGAAATGG (2) 34.3 0.0343 P8 Cb GC GACAAGAACT (5) 11.4 0.0114 P8 Cb GC TTGGAAATAA (2) 4.9 0.0049 P8 Cb GC ATGTTTCTTC (4) 3.3 0.0033 Cb medulloblastoma AAGGAAATGG (2) 11.6 0.0116 Cb medulloblastoma TGATGCAAAT 4.6 0.0046 Cb medulloblastoma ATGTTTCTTC (4) 2.3 0.0023 P8 GC+1d culture AAGGAAATGG (2) 24 0.024 P8 GC+1d culture ATGTTTCTTC (4) 4.6 0.0046 P8 GC+1d culture GACAAGAACT (5) 3.4 0.0034 P8 GC+1d culture TGATGCAAAT 3.4 0.0034 P8 GC+1d culture TTGGAAATAA (2) 3.4 0.0034 P8 GC+1d culture CTGGGAGTTG (7) 2.3 0.0023 P8 GC+SHH+1d culture AAGGAAATGG (2) 30.4 0.0304 P8 GC+SHH+1d culture TTGGAAATAA (2) 3.5 0.0035 P8 GC+SHH+1d culture GACAAGAACT (5) 2.3 0.0023 P8 GC+SHH+1d culture ATGTTTCTTC (4) 1.2 0.0012 P8 GC+SHH+1d culture CTGGGAGTTG (7) 1.2 0.0012 P8 GC+SHH+1d culture TGATGCAAAT 1.2 0.0012 3T3 fibroblasts AAGGAAATGG (2) 14 0.014 E15 cortex AAGGAAATGG (2) 44.5 0.0445 P1 cortex AAGGAAATGG (2) 36.4 0.0364 P1 cortex CTGGGAGTTG (7) 4.5 0.0045 P1 cortex TGATGCAAAT 4.5 0.0045 P1 cortex TTGGAAATAA (2) 4.5 0.0045 Hypothalamus AAGGAAATGG (2) 25.4 0.0254 Hypothalamus CTGGGAGTTG (7) 3.6 0.0036 Hypothalamus GACAAGAACT (5) 3.6 0.0036 Hypothalamus TTGGAAATAA (2) 3.6 0.0036 Hypothalamus ATGTTTCTTC (4) 1.8 0.0018 E12.5 retina AAGGAAATGG (2) 33.8 0.0338 E12.5 retina TTGGAAATAA (2) 3.8 0.0038 E12.5 retina ATGTTTCTTC (4) 1.9 0.0019 E12.5 retina CTGGGAGTTG (7) 1.9 0.0019 E12.5 retina TGATGCAAAT 1.9 0.0019 E14.5 retina AAGGAAATGG (2) 27.3 0.0273 E14.5 retina TTGGAAATAA (2) 7.3 0.0073 E14.5 retina GACAAGAACT (5) 1.8 0.0018 E14.5 retina TGATGCAAAT 1.8 0.0018 E16.5 retina AAGGAAATGG (2) 43.5 0.0435 E16.5 retina TGATGCAAAT 3.6 0.0036 E16.5 retina TTGGAAATAA (2) 3.6 0.0036 E18.5 retina AAGGAAATGG (2) 14.6 0.0146 E18.5 retina TTGGAAATAA (2) 5.5 0.0055 E18.5 retina GACAAGAACT (5) 1.8 0.0018 P0.5 retina AAGGAAATGG (2) 33.4 0.0334 P0.5 retina CTGGGAGTTG (7) 7.9 0.0079 P0.5 retina GACAAGAACT (5) 2 0.002 P0.5 retina TGATGCAAAT 2 0.002 P2.5 retina AAGGAAATGG (2) 8.8 0.0088 P2.5 retina TTGGAAATAA (2) 7 0.007 P2.5 retina GACAAGAACT (5) 1.8 0.0018 P2.5 retina TGATGCAAAT 1.8 0.0018 P4.5 retina TGATGCAAAT 5.9 0.0059 P4.5 retina TTGGAAATAA (2) 5.9 0.0059 P4.5 retina CTGGGAGTTG (7) 4 0.004 P6.5 retina AAGGAAATGG (2) 10 0.01 P6.5 retina TTGGAAATAA (2) 5 0.005 P6.5 retina GACAAGAACT (5) 3.3 0.0033 P6.5 retina CTGGGAGTTG (7) 1.7 0.0017 P10.5 crx- retina AAGGAAATGG (2) 18.6 0.0186 P10.5 crx- retina TTGGAAATAA (2) 3.7 0.0037 P10.5 crx- retina GACAAGAACT (5) 1.9 0.0019 P10.5 crx+ retina AAGGAAATGG (2) 5.8 0.0058 P10.5 crx+ retina GATCCAGGGG 5.8 0.0058 P10.5 crx+ retina GACAAGAACT (5) 3.8 0.0038 P10.5 crx+ retina CTGGGAGTTG (7) 1.9 0.0019 P10.5 crx+ retina TGATGCAAAT 1.9 0.0019 P10.5 crx+ retina TTGGAAATAA (2) 1.9 0.0019 Adult retinal CTGGGAGTTG (7) 13 0.013 Adult retinal AAGGAAATGG (2) 3.7 0.0037 Adult retinal GACAAGAACT (5) 1.9 0.0019 Adult retinal GATCCAGGGG 1.9 0.0019 ONL AAGGAAATGG (2) 7.7 0.0077 ONL CTGGGAGTTG (7) 5.7 0.0057 ONL AGAGAAAGAA (10) 3.8 0.0038 ONL GACAAGAACT (5) 1.9 0.0019