Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.227583	D5Wsu150e	DNA segment, Chr 5, Wayne State University 150, expressed	5	5 65.0 cM	28023
Mm.227583	9530097L16Rik	RIKEN cDNA 9530097L16 gene	5		319250
Mm.227583	Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	5		11938
Gene Ontology	ATP binding | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | calcium ion binding | calcium ion transport | calcium-transporting ATPase activity | catalytic activity | cation transport | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | integral to membrane | magnesium ion binding | membrane | metabolism | microsome | regulation of muscle contraction | sarcoplasmic reticulum
Human Homolog	ATP2A2[ATPase, Ca++ transporting, cardiac muscle, slow twitch 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTCAGGTA (3) 4.9 0.0049 P8 Cb GC GTGGTGGTGG (4) 4.9 0.0049 P8 Cb GC AACATATTGG (4) 3.3 0.0033 P8 Cb GC GTGGCTCCTG (3) 3.3 0.0033 P8 Cb GC ATTCTCTGGA (3) 1.6 0.0016 Cb medulloblastoma ATTTCAGGTA (3) 60.1 0.0601 Cb medulloblastoma CTTTTTCATC (3) 4.6 0.0046 Cb medulloblastoma TACAGTGTTC (3) 4.6 0.0046 Cb medulloblastoma CTTTCTAATG (3) 2.3 0.0023 Cb medulloblastoma GTGGTGGTGG (4) 2.3 0.0023 P8 GC+1d culture ATTTCAGGTA (3) 11.4 0.0114 P8 GC+1d culture ATTCTCTGGA (3) 4.6 0.0046 P8 GC+1d culture AACATATTGG (4) 1.1 0.0011 P8 GC+1d culture CTTTCTAATG (3) 1.1 0.0011 P8 GC+SHH+1d culture ATTTCAGGTA (3) 12.9 0.0129 P8 GC+SHH+1d culture ATTCTCTGGA (3) 4.7 0.0047 P8 GC+SHH+1d culture AACATATTGG (4) 3.5 0.0035 P8 GC+SHH+1d culture CGCTGTGAGA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTTTCTAATG (3) 1.2 0.0012 E15 cortex ATTCTCTGGA (3) 4.9 0.0049 P1 cortex ATTTCAGGTA (3) 9.1 0.0091 Hypothalamus ATTTCAGGTA (3) 27.2 0.0272 Hypothalamus CGCTGTGAGA (3) 1.8 0.0018 Hypothalamus CTTTTTCATC (3) 1.8 0.0018 Hypothalamus GTGGTGGTGG (4) 1.8 0.0018 E12.5 retina ATTTCAGGTA (3) 9.4 0.0094 E12.5 retina CTTTTTCATC (3) 3.8 0.0038 E12.5 retina AACATATTGG (4) 1.9 0.0019 E12.5 retina ATTCTCTGGA (3) 1.9 0.0019 E12.5 retina GTGGTGGTGG (4) 1.9 0.0019 E14.5 retina ATTTCAGGTA (3) 3.6 0.0036 E14.5 retina AACATATTGG (4) 1.8 0.0018 E16.5 retina ATTTCAGGTA (3) 7.2 0.0072 E16.5 retina ATTCTCTGGA (3) 3.6 0.0036 E16.5 retina CTTTCTAATG (3) 1.8 0.0018 E16.5 retina CTTTTTCATC (3) 1.8 0.0018 E16.5 retina GTGGTGGTGG (4) 1.8 0.0018 E16.5 retina TACAGTGTTC (3) 1.8 0.0018 E16.5 retina TTTGACTGTA (4) 1.8 0.0018 E18.5 retina ATTTCAGGTA (3) 7.3 0.0073 E18.5 retina AACATATTGG (4) 1.8 0.0018 E18.5 retina CTTTTTCATC (3) 1.8 0.0018 E18.5 retina TACAGTGTTC (3) 1.8 0.0018 P0.5 retina ATTCTCTGGA (3) 7.9 0.0079 P0.5 retina ATTTCAGGTA (3) 5.9 0.0059 P0.5 retina CTTTTTCATC (3) 2 0.002 P2.5 retina ATTTCAGGTA (3) 8.8 0.0088 P2.5 retina CTTTCTAATG (3) 5.3 0.0053 P2.5 retina TTTCAATGTC (3) 1.8 0.0018 P4.5 retina ATTTCAGGTA (3) 11.9 0.0119 P4.5 retina ATTCTCTGGA (3) 2 0.002 P6.5 retina ATTTCAGGTA (3) 10 0.01 P6.5 retina AACATATTGG (4) 1.7 0.0017 P6.5 retina CTTTTTCATC (3) 1.7 0.0017 P6.5 retina GTGGCTCCTG (3) 1.7 0.0017 P6.5 retina GTGGTGGTGG (4) 1.7 0.0017 P10.5 crx- retina ATTTCAGGTA (3) 11.1 0.0111 P10.5 crx- retina GTGGTGGTGG (4) 3.7 0.0037 P10.5 crx- retina CTTTCTAATG (3) 1.9 0.0019 P10.5 crx- retina TTTGACTGTA (4) 1.9 0.0019 P10.5 crx+ retina ATTTCAGGTA (3) 11.5 0.0115 P10.5 crx+ retina CGCTGTGAGA (3) 1.9 0.0019 P10.5 crx+ retina CTTTCTAATG (3) 1.9 0.0019 P10.5 crx+ retina GTGGTGGTGG (4) 1.9 0.0019 Adult retinal ATTTCAGGTA (3) 3.7 0.0037 Adult retinal AACATATTGG (4) 1.9 0.0019 Adult retinal ATTCTCTGGA (3) 1.9 0.0019 Adult retinal CTTTCTAATG (3) 1.9 0.0019 Adult retinal GTGGCTCCTG (3) 1.9 0.0019 Adult retinal GTGGTGGTGG (4) 1.9 0.0019 Adult retinal TTTGACTGTA (4) 1.9 0.0019 ONL ATTTCAGGTA (3) 19.2 0.0192 ONL GTGGTGGTGG (4) 3.8 0.0038 ONL CTTTCTAATG (3) 1.9 0.0019