Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.236868	Rps3	ribosomal protein S3	7	7 49.6 cM	27050
Gene Ontology	cytoplasm | intracellular | nucleic acid binding | protein biosynthesis | ribonucleoprotein complex | ribosome | small ribosomal subunit | structural constituent of ribosome
Human Homolog	RPS3[ribosomal protein S3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 217 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCCAGCCAG (3) 112.6 0.1126 P8 Cb GC AAGTTTGTGG (2) 9.8 0.0098 P8 Cb GC TGAGCATCGT 6.5 0.0065 P8 Cb GC ATCAGGCAGA 1.6 0.0016 P8 Cb GC ATGAGTACAG 1.6 0.0016 P8 Cb GC ATGTGCAGTC 1.6 0.0016 P8 Cb GC CCCCAGCCTG (3) 1.6 0.0016 P8 Cb GC CCCCATCCAG 1.6 0.0016 P8 Cb GC CTGCCCTGGG (2) 1.6 0.0016 P8 Cb GC GACATTAAAG (2) 1.6 0.0016 P8 Cb GC GCCCAGCCAG 1.6 0.0016 P8 Cb GC TCCCAGCCAG 1.6 0.0016 P8 Cb GC TGAGCATCGG (3) 1.6 0.0016 P8 Cb GC TGCTCCTCAG (2) 1.6 0.0016 Cb medulloblastoma CCCCAGCCAG (3) 78.6 0.0786 Cb medulloblastoma CTGCCCTGGG (2) 6.9 0.0069 Cb medulloblastoma TGAGCATCGT 4.6 0.0046 Cb medulloblastoma CCAGACCAAA 2.3 0.0023 Cb medulloblastoma GGTGGTGGCT 2.3 0.0023 Cb medulloblastoma TCCCAGCCAG 2.3 0.0023 Cb medulloblastoma TGAGCATCGG (3) 2.3 0.0023 Cb medulloblastoma TGCTCCTCAG (2) 2.3 0.0023 P8 GC+1d culture CCCCAGCCAG (3) 151.8 0.1518 P8 GC+1d culture GACATTAAAG (2) 5.7 0.0057 P8 GC+1d culture CCCCAGCCTG (3) 4.6 0.0046 P8 GC+1d culture TGAGCATCGG (3) 4.6 0.0046 P8 GC+1d culture TGAGCATCGT 3.4 0.0034 P8 GC+1d culture ATGAGTACAG 2.3 0.0023 P8 GC+1d culture CTGCCCTGGG (2) 2.3 0.0023 P8 GC+1d culture GCGCACAGCT 1.1 0.0011 P8 GC+1d culture TCCCAGCCAG 1.1 0.0011 P8 GC+1d culture TGGTGGCTGG 1.1 0.0011 P8 GC+1d culture TTCTCCTCAT 1.1 0.0011 P8 GC+SHH+1d culture CCCCAGCCAG (3) 139.3 0.1393 P8 GC+SHH+1d culture GACATTAAAG (2) 7 0.007 P8 GC+SHH+1d culture CTGCCCTGGG (2) 5.9 0.0059 P8 GC+SHH+1d culture TGAGCATCGG (3) 3.5 0.0035 P8 GC+SHH+1d culture ATGAGTACAG 2.3 0.0023 P8 GC+SHH+1d culture CCCCCAGCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCCAGCCAG 2.3 0.0023 P8 GC+SHH+1d culture TGCTCCTCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture ATCAGGCAGA 1.2 0.0012 P8 GC+SHH+1d culture ATGTGCAGTC 1.2 0.0012 P8 GC+SHH+1d culture CCAGACCAAA 1.2 0.0012 P8 GC+SHH+1d culture CCCAGCCAGT 1.2 0.0012 P8 GC+SHH+1d culture CCCCACCCAC 1.2 0.0012 P8 GC+SHH+1d culture GACTTGGCCC 1.2 0.0012 P8 GC+SHH+1d culture GCTGGTGGCT (3) 1.2 0.0012 P8 GC+SHH+1d culture TCCCAGCCAG 1.2 0.0012 3T3 fibroblasts CCCCAGCCAG (3) 308.4 0.3084 3T3 fibroblasts CACAGAAAGT (6) 3.5 0.0035 3T3 fibroblasts GACATTAAAG (2) 3.5 0.0035 3T3 fibroblasts GACTTGGCCC 3.5 0.0035 3T3 fibroblasts TGAGCATCGT 3.5 0.0035 3T3 fibroblasts TGCTCCTCAG (2) 3.5 0.0035 E15 cortex CCCCAGCCAG (3) 188 0.188 E15 cortex CTGCCCTGGG (2) 9.9 0.0099 E15 cortex TGGTGGCTGG 9.9 0.0099 E15 cortex CCCCAGCCTG (3) 4.9 0.0049 E15 cortex GACATTAAAG (2) 4.9 0.0049 E15 cortex GCTGGTGGCT (3) 4.9 0.0049 E15 cortex TCCCAGCCAG 4.9 0.0049 E15 cortex TGAGCATCGT 4.9 0.0049 P1 cortex CCCCAGCCAG (3) 72.7 0.0727 P1 cortex CCCCATCCAG 4.5 0.0045 Hypothalamus CCCCAGCCAG (3) 74.3 0.0743 Hypothalamus GACTTGGCCC 10.9 0.0109 Hypothalamus CCCAGCCAGT 9.1 0.0091 Hypothalamus GCTGGTGGCT (3) 7.2 0.0072 Hypothalamus TGAGCATCGG (3) 5.4 0.0054 Hypothalamus TGCTCCTCAG (2) 5.4 0.0054 Hypothalamus AAGTTGGTGA 3.6 0.0036 Hypothalamus AAGTTTGTGG (2) 1.8 0.0018 Hypothalamus CTGCCCTGGG (2) 1.8 0.0018 Hypothalamus CTTTCATAGG 1.8 0.0018 Hypothalamus GGCTGGGCCC 1.8 0.0018 Hypothalamus TGAGCATCGT 1.8 0.0018 Hypothalamus TGGTGGCTGG 1.8 0.0018 Hypothalamus TTGAGCATTC (2) 1.8 0.0018 E12.5 retina CCCCAGCCAG (3) 255.3 0.2553 E12.5 retina GACATTAAAG (2) 13.1 0.0131 E12.5 retina TGGTGGCTGG 5.6 0.0056 E12.5 retina GACTTGGCCC 3.8 0.0038 E12.5 retina CACAGAAAGT (6) 1.9 0.0019 E12.5 retina CCCCACCCAC 1.9 0.0019 E12.5 retina CCCCCAGCCA (3) 1.9 0.0019 E12.5 retina CTGCCCTGGG (2) 1.9 0.0019 E12.5 retina CTTTCATAGG 1.9 0.0019 E12.5 retina GCTGGTGGCT (3) 1.9 0.0019 E12.5 retina TGAGCATCGT 1.9 0.0019 E14.5 retina CCCCAGCCAG (3) 235 0.235 E14.5 retina GACTTGGCCC 18.2 0.0182 E14.5 retina GCTGGTGGCT (3) 16.4 0.0164 E14.5 retina ATTTTCACTT 12.8 0.0128 E14.5 retina ATATTCAGTT 5.5 0.0055 E14.5 retina ATCTTCACTT 5.5 0.0055 E14.5 retina GCGCACAGCT 5.5 0.0055 E14.5 retina ATCAGGCAGA 3.6 0.0036 E14.5 retina ATGAGTACAG 3.6 0.0036 E14.5 retina TGAGCATCGT 3.6 0.0036 E14.5 retina TGGTGGCTGG 3.6 0.0036 E14.5 retina CCCAGCAGTG (3) 1.8 0.0018 E14.5 retina CCCCACCCAC 1.8 0.0018 E14.5 retina CTGCCCTGGG (2) 1.8 0.0018 E14.5 retina GCGGTGCACA 1.8 0.0018 E14.5 retina TGCTCCTCAG (2) 1.8 0.0018 E16.5 retina CCCCAGCCAG (3) 268.1 0.2681 E16.5 retina GCTGGTGGCT (3) 18.1 0.0181 E16.5 retina GACTTGGCCC 14.5 0.0145 E16.5 retina CTGCCCTGGG (2) 10.9 0.0109 E16.5 retina TGGTGGCTGG 10.9 0.0109 E16.5 retina ATCTTCACTT 7.2 0.0072 E16.5 retina GCGCACAGCT 7.2 0.0072 E16.5 retina AAGTTTGTGG (2) 5.4 0.0054 E16.5 retina ATGAGTACAG 3.6 0.0036 E16.5 retina ATGTGCAGTC 3.6 0.0036 E16.5 retina TGAGCATCGT 3.6 0.0036 E16.5 retina TGCTCCTCAG (2) 3.6 0.0036 E16.5 retina TTGAGCATTC (2) 3.6 0.0036 E16.5 retina ATCAGGCAGA 1.8 0.0018 E16.5 retina CCCAGCCAGT 1.8 0.0018 E16.5 retina CCCCCAGCCA (3) 1.8 0.0018 E16.5 retina GACATTAAAG (2) 1.8 0.0018 E16.5 retina GGCTGGGCCC 1.8 0.0018 E16.5 retina TCCCAGCCAG 1.8 0.0018 E18.5 retina CCCCAGCCAG (3) 174.6 0.1746 E18.5 retina GACTTGGCCC 7.3 0.0073 E18.5 retina CCCAGCCAGT 3.6 0.0036 E18.5 retina CCCCCAGCCA (3) 3.6 0.0036 E18.5 retina TGAGCATCGT 3.6 0.0036 E18.5 retina CTTTCATAGG 1.8 0.0018 E18.5 retina GCGCACAGCT 1.8 0.0018 E18.5 retina GCTGGTGGCT (3) 1.8 0.0018 E18.5 retina TGAGCATCGG (3) 1.8 0.0018 P0.5 retina CCCCAGCCAG (3) 176.6 0.1766 P0.5 retina CCCCAGCCTG (3) 3.9 0.0039 P0.5 retina CCCCATCCAG 3.9 0.0039 P0.5 retina GACATTAAAG (2) 3.9 0.0039 P0.5 retina GACTTGGCCC 3.9 0.0039 P0.5 retina ATGAGTACAG 2 0.002 P0.5 retina CCCCCAGCCA (3) 2 0.002 P0.5 retina CTTTCATAGG 2 0.002 P0.5 retina GCTGGTGGCT (3) 2 0.002 P0.5 retina TGAGCATCGT 2 0.002 P2.5 retina CCCCAGCCAG (3) 126.7 0.1267 P2.5 retina GCTGGTGGTT 7 0.007 P2.5 retina CTGCCCTGGG (2) 5.3 0.0053 P2.5 retina GACATTAAAG (2) 5.3 0.0053 P2.5 retina AAGTTTGTGG (2) 1.8 0.0018 P2.5 retina ATGAGTACAG 1.8 0.0018 P2.5 retina CCCAGCAGTG (3) 1.8 0.0018 P2.5 retina GACTTGGCCC 1.8 0.0018 P2.5 retina TCCCAGCCAG 1.8 0.0018 P2.5 retina TGAGCATCGT 1.8 0.0018 P2.5 retina TGGTGGCTGG 1.8 0.0018 P4.5 retina CCCCAGCCAG (3) 144.6 0.1446 P4.5 retina GACATTAAAG (2) 4 0.004 P4.5 retina GACTTGGCCC 4 0.004 P4.5 retina AAGTTGGTGA 2 0.002 P4.5 retina ATCAGGCAGA 2 0.002 P4.5 retina ATGAGTACAG 2 0.002 P4.5 retina ATGTGCAGTC 2 0.002 P4.5 retina GCTGGTGGTT 2 0.002 P4.5 retina GGCTGGGCCC 2 0.002 P4.5 retina TGAGCATCGG (3) 2 0.002 P4.5 retina TGAGCATCGT 2 0.002 P4.5 retina TGGTGGCTGG 2 0.002 P6.5 retina CCCCAGCCAG (3) 106.7 0.1067 P6.5 retina CTGCCCTGGG (2) 6.7 0.0067 P6.5 retina TGAGCATCGT 5 0.005 P6.5 retina ATGTGCAGTC 3.3 0.0033 P6.5 retina CACAGAAAGT (6) 3.3 0.0033 P6.5 retina CCCAGCAGTG (3) 1.7 0.0017 P6.5 retina CCCAGCCAGT 1.7 0.0017 P6.5 retina GACATTAAAG (2) 1.7 0.0017 P6.5 retina GACTTGGCCC 1.7 0.0017 P6.5 retina TGAGCATCGG (3) 1.7 0.0017 P6.5 retina TGGTGGCTGG 1.7 0.0017 P10.5 crx- retina CCCCAGCCAG (3) 87.3 0.0873 P10.5 crx- retina TGAGCATCGG (3) 9.3 0.0093 P10.5 crx- retina ATGAGTACAG 7.4 0.0074 P10.5 crx- retina TGAGCATCGT 5.6 0.0056 P10.5 crx- retina CTGCCCTGGG (2) 3.7 0.0037 P10.5 crx- retina GCTGGTGGCT (3) 3.7 0.0037 P10.5 crx- retina AAGTTTGTGG (2) 1.9 0.0019 P10.5 crx- retina GACTTGGCCC 1.9 0.0019 P10.5 crx- retina GCGGTGCACA 1.9 0.0019 P10.5 crx- retina TCCCAGCCAG 1.9 0.0019 P10.5 crx+ retina CCCCAGCCAG (3) 82.7 0.0827 P10.5 crx+ retina CTGCCCTGGG (2) 5.8 0.0058 P10.5 crx+ retina TGAGCATCGG (3) 3.8 0.0038 P10.5 crx+ retina GACATTAAAG (2) 1.9 0.0019 P10.5 crx+ retina GCTGGTGGTT 1.9 0.0019 P10.5 crx+ retina GGCTGGGCCC 1.9 0.0019 P10.5 crx+ retina TGGTGGCTGG 1.9 0.0019 Adult retinal CCCCAGCCAG (3) 74.1 0.0741 Adult retinal GACATTAAAG (2) 3.7 0.0037 Adult retinal AAGTTTGTGG (2) 1.9 0.0019 Adult retinal ATTTTCACTT 1.9 0.0019 Adult retinal CCAGACCAAA 1.9 0.0019 Adult retinal CCCCCAGCAG (2) 1.9 0.0019 Adult retinal CTGCCCTGGG (2) 1.9 0.0019 Adult retinal GACTTGGCCC 1.9 0.0019 Adult retinal GCGCACAGCT 1.9 0.0019 Adult retinal GCTGGTGGCT (3) 1.9 0.0019 Adult retinal GCTGGTGGTT 1.9 0.0019 Adult retinal TGAGCATCGG (3) 1.9 0.0019 Adult retinal TGAGCATCGT 1.9 0.0019 Adult retinal TGGTGGCTGG 1.9 0.0019 ONL CCCCAGCCAG (3) 30.6 0.0306 ONL ATGAGTACAG 3.8 0.0038 ONL GACTTGGCCC 3.8 0.0038 ONL ATGTGCAGTC 1.9 0.0019 ONL CTGCCCTGGG (2) 1.9 0.0019 ONL GCGGTGCACA 1.9 0.0019 ONL TGAGCATCGG (3) 1.9 0.0019 ONL TGGTGGCTGG 1.9 0.0019