Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.251003	Plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	5	5 80.0 cM	26433
Gene Ontology	endoplasmic reticulum | extracellular space | membrane | oxidoreductase activity | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | procollagen-lysine 5-dioxygenase activity | protein modification
Human Homolog	PLOD3[procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 31 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGTCAGTGG 1.6 0.0016 Cb medulloblastoma CCGGCCTCCC (2) 6.9 0.0069 Cb medulloblastoma GACTCAGGGA (2) 2.3 0.0023 P8 GC+1d culture CCGGCCTCCC (2) 4.6 0.0046 P8 GC+1d culture GACTCAGGGA (2) 2.3 0.0023 P8 GC+SHH+1d culture GACTCAGGGA (2) 2.3 0.0023 3T3 fibroblasts CCGGCCTCCC (2) 24.5 0.0245 3T3 fibroblasts GACTCAGGGA (2) 10.5 0.0105 E15 cortex CCGGCCTCCC (2) 24.7 0.0247 Hypothalamus GGGTCAGTGG 1.8 0.0018 E12.5 retina GACTCAGGGA (2) 7.5 0.0075 E12.5 retina GGGTCAGTGG 1.9 0.0019 E14.5 retina GACTCAGGGA (2) 3.6 0.0036 E14.5 retina ATTAAAATTT (3) 1.8 0.0018 E16.5 retina GGGTCAGTGG 3.6 0.0036 E16.5 retina ATTAAAATTT (3) 1.8 0.0018 E16.5 retina GACTCAGGGA (2) 1.8 0.0018 E18.5 retina ATTAAAATTT (3) 1.8 0.0018 E18.5 retina GACTCAGGGA (2) 1.8 0.0018 P0.5 retina CCGGCCTCCC (2) 2 0.002 P0.5 retina GACTCAGGGA (2) 2 0.002 P2.5 retina GACTCAGGGA (2) 3.5 0.0035 P4.5 retina CCGGCCTCCC (2) 4 0.004 P4.5 retina GACTCAGGGA (2) 4 0.004 P6.5 retina GACTCAGGGA (2) 6.7 0.0067 P6.5 retina CCGGCCTCCC (2) 3.3 0.0033 P10.5 crx- retina GACTCAGGGA (2) 3.7 0.0037 P10.5 crx+ retina CCGGCCTCCC (2) 3.8 0.0038 P10.5 crx+ retina GACTCAGGGA (2) 3.8 0.0038 Adult retinal CCGGCCTCCC (2) 3.7 0.0037 ONL GACTCAGGGA (2) 7.7 0.0077