Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.266767
Vapa
vesicle-associated membrane protein, associated protein A
17
30960
Mm.266767
AA517753
expressed sequence AA517753
17
106498
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 60 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTATTTAACA
(
2
)
17.9
0.0179
P8 Cb GC
GTCACCGCGG
(
2
)
8.2
0.0082
P8 Cb GC
GCCCGCGGTG
(
2
)
6.5
0.0065
P8 Cb GC
ATATTAGCAA
(
2
)
3.3
0.0033
P8 Cb GC
GCAGAATTTT
(
2
)
1.6
0.0016
Cb medulloblastoma
GTCACCGCGG
(
2
)
27.7
0.0277
Cb medulloblastoma
GTATTTAACA
(
2
)
9.2
0.0092
Cb medulloblastoma
GCCCGCGGTG
(
2
)
2.3
0.0023
P8 GC+1d culture
GTCACCGCGG
(
2
)
11.4
0.0114
P8 GC+1d culture
GTATTTAACA
(
2
)
5.7
0.0057
P8 GC+1d culture
GCCCGCGGTG
(
2
)
3.4
0.0034
P8 GC+1d culture
ATATTAGCAA
(
2
)
2.3
0.0023
P8 GC+1d culture
GCAGAATTTT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
GTATTTAACA
(
2
)
12.9
0.0129
P8 GC+SHH+1d culture
GTCACCGCGG
(
2
)
7
0.007
P8 GC+SHH+1d culture
GCCCGCGGTG
(
2
)
5.9
0.0059
3T3 fibroblasts
GTCACCGCGG
(
2
)
10.5
0.0105
E15 cortex
GTCACCGCGG
(
2
)
9.9
0.0099
P1 cortex
GTCACCGCGG
(
2
)
4.5
0.0045
Hypothalamus
GTATTTAACA
(
2
)
19.9
0.0199
Hypothalamus
GTCACCGCGG
(
2
)
7.2
0.0072
Hypothalamus
GCAGAATTTT
(
2
)
3.6
0.0036
Hypothalamus
ATATTAGCAA
(
2
)
1.8
0.0018
Hypothalamus
GTCACCGGGG
(
2
)
1.8
0.0018
E12.5 retina
GTCACCGCGG
(
2
)
13.1
0.0131
E12.5 retina
GTATTTAACA
(
2
)
9.4
0.0094
E12.5 retina
GCCCGCGGTG
(
2
)
3.8
0.0038
E14.5 retina
GTATTTAACA
(
2
)
7.3
0.0073
E14.5 retina
GTCACCGCGG
(
2
)
3.6
0.0036
E14.5 retina
GCCCGCGGTG
(
2
)
1.8
0.0018
E16.5 retina
GTATTTAACA
(
2
)
16.3
0.0163
E16.5 retina
GTCACCGCGG
(
2
)
5.4
0.0054
E16.5 retina
GCCCGCGGTG
(
2
)
3.6
0.0036
E16.5 retina
ATATTAGCAA
(
2
)
1.8
0.0018
E16.5 retina
GCAGAATTTT
(
2
)
1.8
0.0018
E16.5 retina
GTCACCGGGG
(
2
)
1.8
0.0018
E18.5 retina
GTATTTAACA
(
2
)
14.6
0.0146
E18.5 retina
GCCCGCGGTG
(
2
)
1.8
0.0018
E18.5 retina
GTCACCGCGG
(
2
)
1.8
0.0018
P0.5 retina
GTATTTAACA
(
2
)
7.9
0.0079
P2.5 retina
GTATTTAACA
(
2
)
14.1
0.0141
P2.5 retina
GTCACCGCGG
(
2
)
8.8
0.0088
P2.5 retina
GTCACCGGGG
(
2
)
1.8
0.0018
P4.5 retina
GTATTTAACA
(
2
)
17.8
0.0178
P4.5 retina
GTCACCGCGG
(
2
)
5.9
0.0059
P6.5 retina
GTATTTAACA
(
2
)
6.7
0.0067
P6.5 retina
GCCCGCGGTG
(
2
)
5
0.005
P6.5 retina
GTCACCGCGG
(
2
)
5
0.005
P10.5 crx- retina
GTCACCGCGG
(
2
)
14.9
0.0149
P10.5 crx- retina
GTATTTAACA
(
2
)
5.6
0.0056
P10.5 crx- retina
GCCCGCGGTG
(
2
)
3.7
0.0037
P10.5 crx- retina
GTCACCGGGG
(
2
)
3.7
0.0037
P10.5 crx- retina
ATATTAGCAA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GTCACCGCGG
(
2
)
13.5
0.0135
P10.5 crx+ retina
GCCCGCGGTG
(
2
)
5.8
0.0058
P10.5 crx+ retina
GTATTTAACA
(
2
)
3.8
0.0038
P10.5 crx+ retina
ATATTAGCAA
(
2
)
1.9
0.0019
Adult retinal
GTATTTAACA
(
2
)
1.9
0.0019
ONL
GTATTTAACA
(
2
)
5.7
0.0057
ONL
GCCCGCGGTG
(
2
)
3.8
0.0038
