Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.273049	Ccnd1	cyclin D1	7	7 F5 (7 72.3 cM)	12443
Gene Ontology	adipocyte differentiation | cell cycle | cyclin-dependent protein kinase holoenzyme complex | cyclin-dependent protein kinase regulator activity | cytosol | kinase activity | nucleus | protein amino acid phosphorylation | protein binding | protein kinase activity | re-entry into mitotic cell cycle | regulation of cell cycle
Human Homolog	CCND1[cyclin D1 (PRAD1: parathyroid adenomatosis 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 12 In Situ Hybridization Images

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SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGTTACCAG (2) 6.5 0.0065 P8 Cb GC GTCCAGGAAA (2) 3.3 0.0033 P8 Cb GC AGGTATTGTG 1.6 0.0016 P8 Cb GC GCAGTCTGAC 1.6 0.0016 P8 Cb GC TTCAAGTTTT (2) 1.6 0.0016 Cb medulloblastoma TTCAAGTTTT (2) 4.6 0.0046 Cb medulloblastoma GCAGTCTGAC 2.3 0.0023 P8 GC+1d culture GTCCAGGAAA (2) 1.1 0.0011 P8 GC+1d culture TTCAAGTTTT (2) 1.1 0.0011 P8 GC+SHH+1d culture GTCCAGGAAA (2) 17.6 0.0176 P8 GC+SHH+1d culture AGGTATTGTG 3.5 0.0035 P8 GC+SHH+1d culture TTGTTACCAG (2) 3.5 0.0035 P8 GC+SHH+1d culture GCGCTGCTAC 1.2 0.0012 P8 GC+SHH+1d culture TTCAAGTTTT (2) 1.2 0.0012 3T3 fibroblasts GTCCAGGAAA (2) 3.5 0.0035 3T3 fibroblasts TTCAAGTTTT (2) 3.5 0.0035 P1 cortex CACAGACCTT (3) 4.5 0.0045 P1 cortex TTCAAGTTTT (2) 4.5 0.0045 Hypothalamus CACAACAGGC 3.6 0.0036 Hypothalamus GTCCAGGAAA (2) 1.8 0.0018 Hypothalamus TTCAAGTTTT (2) 1.8 0.0018 E12.5 retina GTCCAGGAAA (2) 92 0.092 E12.5 retina AGGTATTGTG 20.7 0.0207 E12.5 retina GCAGTCTGAC 18.8 0.0188 E12.5 retina GCGCTGCTAC 11.3 0.0113 E12.5 retina TTCAAGTTTT (2) 11.3 0.0113 E12.5 retina TCTGAGAGAT 7.5 0.0075 E12.5 retina GTTCCTACTT 3.8 0.0038 E12.5 retina CACAACAGGC 1.9 0.0019 E12.5 retina CTGCTGGCCC (2) 1.9 0.0019 E12.5 retina CTGGGCCCTT 1.9 0.0019 E12.5 retina GATACAGCGG 1.9 0.0019 E12.5 retina TTGTTACCAG (2) 1.9 0.0019 E14.5 retina GTCCAGGAAA (2) 195 0.195 E14.5 retina TTCAAGTTTT (2) 25.5 0.0255 E14.5 retina GCAGTCTGAC 21.9 0.0219 E14.5 retina TTGTTACCAG (2) 16.4 0.0164 E14.5 retina TCTGAGAGAT 10.9 0.0109 E14.5 retina GCGCTGCTAC 7.3 0.0073 E14.5 retina GTGATGGGGT (2) 7.3 0.0073 E14.5 retina AGGTATTGTG 5.5 0.0055 E14.5 retina GCGTGTGGCA (2) 5.5 0.0055 E14.5 retina AAAGGCTTTG (2) 3.6 0.0036 E14.5 retina CACAACAGGC 3.6 0.0036 E14.5 retina CACGAGCCTG 3.6 0.0036 E14.5 retina GAACACCAGC 3.6 0.0036 E14.5 retina GATACAGCGG 3.6 0.0036 E14.5 retina TGGTCCCACC 3.6 0.0036 E14.5 retina ACAGGACGAT 1.8 0.0018 E14.5 retina ACCAGTGTGA 1.8 0.0018 E14.5 retina GTAGCTGCTG (2) 1.8 0.0018 E14.5 retina TTCGTGGCCT 1.8 0.0018 E16.5 retina GTCCAGGAAA (2) 163 0.163 E16.5 retina GCAGTCTGAC 32.6 0.0326 E16.5 retina TTCAAGTTTT (2) 18.1 0.0181 E16.5 retina CTGCTGGCCC (2) 14.5 0.0145 E16.5 retina TGGTCCCACC 12.7 0.0127 E16.5 retina AGGTATTGTG 10.9 0.0109 E16.5 retina GCGCTGCTAC 10.9 0.0109 E16.5 retina TTGTTACCAG (2) 9.1 0.0091 E16.5 retina ACCAGTGTGA 7.2 0.0072 E16.5 retina CTGGGCCCTT 5.4 0.0054 E16.5 retina GATACAGCGG 5.4 0.0054 E16.5 retina GCGTGTGGCA (2) 5.4 0.0054 E16.5 retina TCTGAGAGAT 5.4 0.0054 E16.5 retina TTCGTGGCCT 5.4 0.0054 E16.5 retina ACAGGACGAT 3.6 0.0036 E16.5 retina CACAACAGGC 3.6 0.0036 E16.5 retina GTAGCTGCTG (2) 3.6 0.0036 E16.5 retina GTGATGGGGT (2) 3.6 0.0036 E16.5 retina AAAGGCTTTG (2) 1.8 0.0018 E16.5 retina CACAGACCTT (3) 1.8 0.0018 E16.5 retina CACGAGCCTG 1.8 0.0018 E16.5 retina GAACACCAGC 1.8 0.0018 E16.5 retina GTTCCTACTT 1.8 0.0018 E18.5 retina GTCCAGGAAA (2) 296.5 0.2965 E18.5 retina TTCAAGTTTT (2) 38.2 0.0382 E18.5 retina GCAGTCTGAC 25.5 0.0255 E18.5 retina TCTGAGAGAT 7.3 0.0073 E18.5 retina CACAACAGGC 5.5 0.0055 E18.5 retina GCGCTGCTAC 5.5 0.0055 E18.5 retina AGGTATTGTG 3.6 0.0036 E18.5 retina CTGCTGGCCC (2) 3.6 0.0036 E18.5 retina GCGTGTGGCA (2) 3.6 0.0036 E18.5 retina TTGTTACCAG (2) 3.6 0.0036 E18.5 retina ACAGGACGAT 1.8 0.0018 E18.5 retina CACGAGCCTG 1.8 0.0018 E18.5 retina GATACAGCGG 1.8 0.0018 E18.5 retina GTGATGGGGT (2) 1.8 0.0018 P0.5 retina GTCCAGGAAA (2) 149.2 0.1492 P0.5 retina GCAGTCTGAC 27.5 0.0275 P0.5 retina AGGTATTGTG 23.6 0.0236 P0.5 retina TTCAAGTTTT (2) 21.6 0.0216 P0.5 retina TTGTTACCAG (2) 17.7 0.0177 P0.5 retina TCTGAGAGAT 15.7 0.0157 P0.5 retina GCGCTGCTAC 9.8 0.0098 P0.5 retina CACAACAGGC 3.9 0.0039 P0.5 retina GCGTGTGGCA (2) 3.9 0.0039 P0.5 retina TGGTCCCACC 3.9 0.0039 P0.5 retina CTGCTGGCCC (2) 2 0.002 P0.5 retina GATACAGCGG 2 0.002 P0.5 retina GTAGCTGCTG (2) 2 0.002 P2.5 retina GTCCAGGAAA (2) 188.3 0.1883 P2.5 retina AGGTATTGTG 24.6 0.0246 P2.5 retina GCGCTGCTAC 21.1 0.0211 P2.5 retina GCAGTCTGAC 19.4 0.0194 P2.5 retina TTCAAGTTTT (2) 14.1 0.0141 P2.5 retina TTGTTACCAG (2) 7 0.007 P2.5 retina TCTGAGAGAT 5.3 0.0053 P2.5 retina GATACAGCGG 3.5 0.0035 P2.5 retina AAAGGCTTTG (2) 1.8 0.0018 P2.5 retina ACCAGTGTGA 1.8 0.0018 P2.5 retina CTGCTGGCCC (2) 1.8 0.0018 P2.5 retina GCGTGTGGCA (2) 1.8 0.0018 P2.5 retina GTGATGGGGT (2) 1.8 0.0018 P4.5 retina GTCCAGGAAA (2) 59.4 0.0594 P4.5 retina TTCAAGTTTT (2) 15.9 0.0159 P4.5 retina GCAGTCTGAC 7.9 0.0079 P4.5 retina TCTGAGAGAT 5.9 0.0059 P4.5 retina AGGTATTGTG 4 0.004 P4.5 retina TTGTTACCAG (2) 4 0.004 P4.5 retina CACAGACCTT (3) 2 0.002 P4.5 retina CTGGGCCCTT 2 0.002 P4.5 retina GATACAGCGG 2 0.002 P4.5 retina GCGCTGCTAC 2 0.002 P6.5 retina GTCCAGGAAA (2) 8.3 0.0083 P6.5 retina AGGTATTGTG 3.3 0.0033 P6.5 retina TTCAAGTTTT (2) 1.7 0.0017 P10.5 crx- retina GTCCAGGAAA (2) 3.7 0.0037 P10.5 crx- retina CTGCTGGCCC (2) 1.9 0.0019 P10.5 crx- retina GCAGTCTGAC 1.9 0.0019 P10.5 crx- retina TTCAAGTTTT (2) 1.9 0.0019 P10.5 crx- retina TTGTTACCAG (2) 1.9 0.0019 Adult retinal TTCAAGTTTT (2) 3.7 0.0037 ONL GTCCAGGAAA (2) 7.7 0.0077 ONL GCAGTCTGAC 1.9 0.0019