Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.273538	Tubb5	tubulin, beta 5	17	17 B1	22154
Gene Ontology	microtubule | microtubule-based process | structural constituent of cytoskeleton
Human Homolog	OK/SW-cl.56[beta 5-tubulin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

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SAGE Tags

Total 164 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCAGGCACTC 605.2 0.6052 P8 Cb GC TGCCAGGCAC 75 0.075 P8 Cb GC CTCCTCCTGC (3) 35.9 0.0359 P8 Cb GC GGGCAGAGGT 8.2 0.0082 P8 Cb GC GAAAGCACTC (2) 6.5 0.0065 P8 Cb GC AAGGAGGTGG (2) 4.9 0.0049 P8 Cb GC AACGACCTCG 3.3 0.0033 P8 Cb GC GCAGGCATTC (2) 3.3 0.0033 P8 Cb GC GGCACCCTGC 3.3 0.0033 P8 Cb GC AGGGAAATCG 1.6 0.0016 P8 Cb GC GGCACCTGCT 1.6 0.0016 Cb medulloblastoma GCAGGCACTC 78.6 0.0786 Cb medulloblastoma TGCCAGGCAC 6.9 0.0069 Cb medulloblastoma GAAAGCACTC (2) 4.6 0.0046 Cb medulloblastoma GCAGGCACCC (2) 2.3 0.0023 Cb medulloblastoma GCAGGCATTC (2) 2.3 0.0023 P8 GC+1d culture GCAGGCACTC 458.9 0.4589 P8 GC+1d culture CTCCTCCTGC (3) 25.1 0.0251 P8 GC+1d culture TGCCAGGCAC 11.4 0.0114 P8 GC+1d culture AACGACCTCG 8 0.008 P8 GC+1d culture GAAAGCACTC (2) 6.8 0.0068 P8 GC+1d culture AAGGAGGTGG (2) 2.3 0.0023 P8 GC+1d culture GGGCAGAGGT 2.3 0.0023 P8 GC+1d culture AGGGAAATCG 1.1 0.0011 P8 GC+1d culture CCAGAGCCAG 1.1 0.0011 P8 GC+1d culture CCCTCACCCG (2) 1.1 0.0011 P8 GC+1d culture GCAGGCACCC (2) 1.1 0.0011 P8 GC+1d culture GCAGGCATTC (2) 1.1 0.0011 P8 GC+1d culture GGCACCTGCT 1.1 0.0011 P8 GC+SHH+1d culture GCAGGCACTC 615.9 0.6159 P8 GC+SHH+1d culture CTCCTCCTGC (3) 21.1 0.0211 P8 GC+SHH+1d culture TGCCAGGCAC 16.4 0.0164 P8 GC+SHH+1d culture AACGACCTCG 5.9 0.0059 P8 GC+SHH+1d culture GAAAGCACTC (2) 5.9 0.0059 P8 GC+SHH+1d culture GGGCAGAGGT 3.5 0.0035 P8 GC+SHH+1d culture GCAAGCACTC 2.3 0.0023 P8 GC+SHH+1d culture CCAGAGCCAG 1.2 0.0012 P8 GC+SHH+1d culture GCAGGCACCC (2) 1.2 0.0012 P8 GC+SHH+1d culture GCATCGACCC 1.2 0.0012 3T3 fibroblasts GCAGGCACTC 94.6 0.0946 3T3 fibroblasts CTCCTCCTGC (3) 49.1 0.0491 3T3 fibroblasts TGCCAGGCAC 31.5 0.0315 3T3 fibroblasts GGGCAGAGGT 21 0.021 3T3 fibroblasts CCAGAGCCAG 14 0.014 3T3 fibroblasts GCAGGGCACT 3.5 0.0035 E15 cortex GCAGGCACTC 415.6 0.4156 E15 cortex CTCCTCCTGC (3) 49.5 0.0495 E15 cortex GCAGGCACCC (2) 19.8 0.0198 E15 cortex GGGCAGAGGT 19.8 0.0198 E15 cortex AGGGAAATCG 9.9 0.0099 E15 cortex TGCCAGGCAC 9.9 0.0099 E15 cortex GCAAGCACTC 4.9 0.0049 P1 cortex GCAGGCACTC 186.4 0.1864 P1 cortex GGGCAGAGGT 31.8 0.0318 P1 cortex CTCCTCCTGC (3) 18.2 0.0182 P1 cortex TGCCAGGCAC 18.2 0.0182 P1 cortex GGCACCTGCT 9.1 0.0091 P1 cortex AACGACCTCG 4.5 0.0045 P1 cortex AAGGAGGTGG (2) 4.5 0.0045 P1 cortex GCAGGCATTC (2) 4.5 0.0045 Hypothalamus GCAGGCACTC 135.8 0.1358 Hypothalamus TGCCAGGCAC 7.2 0.0072 Hypothalamus GAAAGCACTC (2) 3.6 0.0036 Hypothalamus AACGACCTCG 1.8 0.0018 Hypothalamus CCAGAGCCAG 1.8 0.0018 Hypothalamus GGCACCTGCT 1.8 0.0018 E12.5 retina GCAGGCACTC 630.8 0.6308 E12.5 retina CTCCTCCTGC (3) 24.4 0.0244 E12.5 retina TGCCAGGCAC 20.7 0.0207 E12.5 retina GAAAGCACTC (2) 13.1 0.0131 E12.5 retina AACGACCTCG 3.8 0.0038 E12.5 retina CCCTCACCCG (2) 3.8 0.0038 E12.5 retina GGGCAGAGGT 3.8 0.0038 E12.5 retina CCTGGCTTTG (3) 1.9 0.0019 E12.5 retina GCAGGCCCTC (2) 1.9 0.0019 E14.5 retina GCAGGCACTC 637.7 0.6377 E14.5 retina TGCCAGGCAC 40.1 0.0401 E14.5 retina CCAGAGCCAG 12.8 0.0128 E14.5 retina CCCTCACCCG (2) 10.9 0.0109 E14.5 retina GAAAGCACTC (2) 5.5 0.0055 E14.5 retina AACGACCTCG 3.6 0.0036 E14.5 retina CCTGGCTTTG (3) 3.6 0.0036 E14.5 retina CTCCTCCTGC (3) 3.6 0.0036 E14.5 retina GCAGGCCCTC (2) 3.6 0.0036 E14.5 retina AAGGAGGTGG (2) 1.8 0.0018 E16.5 retina GCAGGCACTC 641.2 0.6412 E16.5 retina TGCCAGGCAC 58 0.058 E16.5 retina CCCTCACCCG (2) 14.5 0.0145 E16.5 retina CCAGAGCCAG 10.9 0.0109 E16.5 retina CTCCTCCTGC (3) 9.1 0.0091 E16.5 retina GCAGGCATTC (2) 9.1 0.0091 E16.5 retina GAAAGCACTC (2) 7.2 0.0072 E16.5 retina AACGACCTCG 5.4 0.0054 E16.5 retina AAGGAGGTGG (2) 3.6 0.0036 E16.5 retina ATGGCCGCCT 3.6 0.0036 E16.5 retina CCTGGCTTTG (3) 3.6 0.0036 E16.5 retina GCATCGACCC 3.6 0.0036 E16.5 retina AGGGAAATCG 1.8 0.0018 E16.5 retina GGCACCTGCT 1.8 0.0018 E18.5 retina GCAGGCACTC 836.7 0.8367 E18.5 retina TGCCAGGCAC 27.3 0.0273 E18.5 retina GAAAGCACTC (2) 9.1 0.0091 E18.5 retina CTCCTCCTGC (3) 5.5 0.0055 E18.5 retina GCAGGCCCTC (2) 5.5 0.0055 E18.5 retina GGGCAGAGGT 3.6 0.0036 E18.5 retina AACGACCTCG 1.8 0.0018 E18.5 retina ATGGCCGCCT 1.8 0.0018 E18.5 retina CCTGGCTTTG (3) 1.8 0.0018 P0.5 retina GCAGGCACTC 355.2 0.3552 P0.5 retina GAAAGCACTC (2) 15.7 0.0157 P0.5 retina TGCCAGGCAC 15.7 0.0157 P0.5 retina CTCCTCCTGC (3) 13.7 0.0137 P0.5 retina AAGGAGGTGG (2) 7.9 0.0079 P0.5 retina AACGACCTCG 3.9 0.0039 P0.5 retina CCCTCACCCG (2) 3.9 0.0039 P0.5 retina ATGGCCGCCT 2 0.002 P0.5 retina CCAGAGCCAG 2 0.002 P0.5 retina GCAGGCACCC (2) 2 0.002 P0.5 retina GGCACCTGCT 2 0.002 P2.5 retina GCAGGCACTC 432.9 0.4329 P2.5 retina CTCCTCCTGC (3) 14.1 0.0141 P2.5 retina TGCCAGGCAC 12.3 0.0123 P2.5 retina GAAAGCACTC (2) 5.3 0.0053 P2.5 retina GCAGGCCCTC (2) 5.3 0.0053 P2.5 retina GGGCAGAGGT 5.3 0.0053 P2.5 retina AACGACCTCG 1.8 0.0018 P2.5 retina CCAGAGCCAG 1.8 0.0018 P2.5 retina GCAGGCATTC (2) 1.8 0.0018 P4.5 retina GCAGGCACTC 323 0.323 P4.5 retina GAAAGCACTC (2) 7.9 0.0079 P4.5 retina CTCCTCCTGC (3) 5.9 0.0059 P4.5 retina GCAGGCCCTC (2) 4 0.004 P4.5 retina GCAGGGCACT 2 0.002 P4.5 retina TGCCAGGCAC 2 0.002 P6.5 retina GCAGGCACTC 223.4 0.2234 P6.5 retina TGCCAGGCAC 10 0.01 P6.5 retina GAAAGCACTC (2) 5 0.005 P6.5 retina CTCCTCCTGC (3) 1.7 0.0017 P6.5 retina GGCACCCTGC 1.7 0.0017 P10.5 crx- retina GCAGGCACTC 128.2 0.1282 P10.5 crx- retina TGCCAGGCAC 7.4 0.0074 P10.5 crx- retina GAAAGCACTC (2) 5.6 0.0056 P10.5 crx- retina AACGACCTCG 3.7 0.0037 P10.5 crx- retina CCCTCACCCG (2) 1.9 0.0019 P10.5 crx- retina GCAGGCACCC (2) 1.9 0.0019 P10.5 crx- retina GCAGGCATTC (2) 1.9 0.0019 P10.5 crx- retina GCAGGGCACT 1.9 0.0019 P10.5 crx- retina GGGCAGAGGT 1.9 0.0019 P10.5 crx+ retina GCAGGCACTC 392.2 0.3922 P10.5 crx+ retina TGCCAGGCAC 13.5 0.0135 P10.5 crx+ retina CTCCTCCTGC (3) 3.8 0.0038 P10.5 crx+ retina GAAAGCACTC (2) 3.8 0.0038 P10.5 crx+ retina GGCACCTGCT 3.8 0.0038 P10.5 crx+ retina CCCTCACCCG (2) 1.9 0.0019 P10.5 crx+ retina GCAGGCACCC (2) 1.9 0.0019 Adult retinal GCAGGCACTC 51.8 0.0518 Adult retinal GAAAGCACTC (2) 5.6 0.0056 Adult retinal TGCCAGGCAC 3.7 0.0037 Adult retinal GCAGGCCCTC (2) 1.9 0.0019 ONL GCAGGCACTC 69 0.069 ONL GAAAGCACTC (2) 5.7 0.0057 ONL AAGGAGGTGG (2) 1.9 0.0019 ONL CTCCTCCTGC (3) 1.9 0.0019 ONL TGCCAGGCAC 1.9 0.0019