Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301259	Tuba1	tubulin, alpha 1	15	15 F1 (15 60.4 cM)	22142
Gene Ontology	GTP binding | microtubule | microtubule-based movement | microtubule-based process | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	TUBA3[tubulin, alpha 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 189 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTGCCCTAG (2) 311.6 0.3116 P8 Cb GC GCATCCAGCC 62 0.062 P8 Cb GC TGCTGCCATT (2) 14.7 0.0147 P8 Cb GC CCCTCACCCA (2) 4.9 0.0049 P8 Cb GC GCTTGCTGCC 4.9 0.0049 P8 Cb GC GTCACGATGT 4.9 0.0049 P8 Cb GC TTGGCCAGGC 4.9 0.0049 P8 Cb GC GCTGCCCTAA (2) 3.3 0.0033 P8 Cb GC TCCTCACGGG 3.3 0.0033 P8 Cb GC GCTGCCTTAG (2) 1.6 0.0016 P8 Cb GC GTAGACAATG 1.6 0.0016 Cb medulloblastoma GCTGCCCTAG (2) 83.2 0.0832 Cb medulloblastoma GCATCCAGCC 4.6 0.0046 Cb medulloblastoma CCCTCACCCA (2) 2.3 0.0023 Cb medulloblastoma GTAGACAATG 2.3 0.0023 Cb medulloblastoma GTCACGATGT 2.3 0.0023 Cb medulloblastoma TCCTCACGGG 2.3 0.0023 P8 GC+1d culture GCTGCCCTAG (2) 552.5 0.5525 P8 GC+1d culture TGCTGCCATT (2) 9.1 0.0091 P8 GC+1d culture CCCTCACCCA (2) 5.7 0.0057 P8 GC+1d culture TCCTCACGGG 4.6 0.0046 P8 GC+1d culture GCTGCCCTAA (2) 2.3 0.0023 P8 GC+1d culture GCTTGCTGCC 2.3 0.0023 P8 GC+1d culture GTAGACAATG 2.3 0.0023 P8 GC+1d culture AGCAGCTTTC 1.1 0.0011 P8 GC+1d culture GCATCCAGCC 1.1 0.0011 P8 GC+1d culture GCTGTCCTAG (2) 1.1 0.0011 P8 GC+1d culture GGACATTTAA 1.1 0.0011 P8 GC+1d culture GGGATGGGCC 1.1 0.0011 P8 GC+1d culture GTCACGATGT 1.1 0.0011 P8 GC+1d culture GTTGCCCTAG 1.1 0.0011 P8 GC+SHH+1d culture GCTGCCCTAG (2) 380.5 0.3805 P8 GC+SHH+1d culture TGCTGCCATT (2) 23.4 0.0234 P8 GC+SHH+1d culture CCCTCACCCA (2) 10.5 0.0105 P8 GC+SHH+1d culture TCCTCACGGG 8.2 0.0082 P8 GC+SHH+1d culture CACACAGCTC 2.3 0.0023 P8 GC+SHH+1d culture GCATCCAGCC 1.2 0.0012 P8 GC+SHH+1d culture GCTTGCTGCC 1.2 0.0012 P8 GC+SHH+1d culture GTAGACAATG 1.2 0.0012 P8 GC+SHH+1d culture GTCACGATGT 1.2 0.0012 P8 GC+SHH+1d culture TTGGCCAGGC 1.2 0.0012 3T3 fibroblasts GCTGCCCTAG (2) 266.4 0.2664 3T3 fibroblasts TGCTGCCATT (2) 45.6 0.0456 3T3 fibroblasts GTAGACAATG 7 0.007 3T3 fibroblasts TCCTCACGGG 7 0.007 E15 cortex GCTGCCCTAG (2) 1944.5 1.9445 E15 cortex GCTGCCCTAA (2) 24.7 0.0247 E15 cortex GCTGCCTAGA 19.8 0.0198 E15 cortex GGCTGCCCTA 19.8 0.0198 E15 cortex CCCTCACCCA (2) 9.9 0.0099 E15 cortex GCATCCAGCC 9.9 0.0099 E15 cortex GCTGTCCTAG (2) 4.9 0.0049 E15 cortex GCTTGCTGCC 4.9 0.0049 E15 cortex TGCTGCCATT (2) 4.9 0.0049 P1 cortex GCTGCCCTAG (2) 1154.5 1.1545 P1 cortex GCTGCCTAGA 27.3 0.0273 P1 cortex GCTGTCCTAG (2) 13.6 0.0136 P1 cortex GGCTGCCCTA 13.6 0.0136 P1 cortex GCTGCCCTAA (2) 9.1 0.0091 P1 cortex GTTGCCCTAG 9.1 0.0091 P1 cortex CACACAGCTC 4.5 0.0045 P1 cortex CCCTCACCCA (2) 4.5 0.0045 P1 cortex GCATCCAGCC 4.5 0.0045 P1 cortex GCTGCCTTAG (2) 4.5 0.0045 P1 cortex GCTTGCTGCC 4.5 0.0045 P1 cortex GTCACGATGT 4.5 0.0045 P1 cortex TTTATTGTGT 4.5 0.0045 Hypothalamus GCTGCCCTAG (2) 41.7 0.0417 Hypothalamus AGGAGGTGAG 3.6 0.0036 Hypothalamus CCCTCACCCA (2) 3.6 0.0036 Hypothalamus GTAGACAATG 3.6 0.0036 Hypothalamus TCCTCACGGG 3.6 0.0036 Hypothalamus GAAAGGAGGG 1.8 0.0018 E12.5 retina GCTGCCCTAG (2) 200.9 0.2009 E12.5 retina TGCTGCCATT (2) 5.6 0.0056 E12.5 retina GCTGTCCTAG (2) 3.8 0.0038 E12.5 retina GAAAGGAGGG 1.9 0.0019 E12.5 retina GCTGCCCTAA (2) 1.9 0.0019 E12.5 retina GTCACGATGT 1.9 0.0019 E12.5 retina TCCTCACGGG 1.9 0.0019 E12.5 retina TGCCCCCGGG 1.9 0.0019 E12.5 retina TGCCCCGGGA (2) 1.9 0.0019 E14.5 retina GCTGCCCTAG (2) 78.3 0.0783 E14.5 retina TCCTCACGGG 21.9 0.0219 E14.5 retina TGCTGCCATT (2) 12.8 0.0128 E14.5 retina TTGGCCAGGC 7.3 0.0073 E14.5 retina AGGAGGTGAG 3.6 0.0036 E14.5 retina ATGAGCAACA 3.6 0.0036 E14.5 retina CCCTCACCCA (2) 3.6 0.0036 E14.5 retina GGGATGGGCC 3.6 0.0036 E14.5 retina TGCCCCGGGA (2) 3.6 0.0036 E14.5 retina CACACAGCTC 1.8 0.0018 E14.5 retina GTAGACAATG 1.8 0.0018 E14.5 retina GTGATGCTTC 1.8 0.0018 E16.5 retina GCTGCCCTAG (2) 99.6 0.0996 E16.5 retina TCCTCACGGG 19.9 0.0199 E16.5 retina TGCTGCCATT (2) 12.7 0.0127 E16.5 retina CCCTCACCCA (2) 10.9 0.0109 E16.5 retina TTGGCCAGGC 10.9 0.0109 E16.5 retina GCATCCAGCC 7.2 0.0072 E16.5 retina GCTTGCTGCC 5.4 0.0054 E16.5 retina GTAGACAATG 5.4 0.0054 E16.5 retina TGCCCCCGGG 5.4 0.0054 E16.5 retina AGGAGGTGAG 3.6 0.0036 E16.5 retina CACACAGCTC 3.6 0.0036 E16.5 retina AGCAGCTTTC 1.8 0.0018 E16.5 retina GCTGCCCTAA (2) 1.8 0.0018 E16.5 retina GGCTGCCCTA 1.8 0.0018 E18.5 retina GCTGCCCTAG (2) 138.2 0.1382 E18.5 retina TGCTGCCATT (2) 23.6 0.0236 E18.5 retina TCCTCACGGG 5.5 0.0055 E18.5 retina CCCTCACCCA (2) 3.6 0.0036 E18.5 retina GCTGCCCTAA (2) 3.6 0.0036 E18.5 retina GGGATGGGCC 3.6 0.0036 E18.5 retina TTTATTGTGT 3.6 0.0036 E18.5 retina GCATCCAGCC 1.8 0.0018 E18.5 retina GTAGACAATG 1.8 0.0018 E18.5 retina TGCCCCCGGG 1.8 0.0018 E18.5 retina TTGGCCAGGC 1.8 0.0018 P0.5 retina GCTGCCCTAG (2) 351.3 0.3513 P0.5 retina TGCTGCCATT (2) 19.6 0.0196 P0.5 retina GCTGCCCTAA (2) 7.9 0.0079 P0.5 retina TCCTCACGGG 5.9 0.0059 P0.5 retina GCTTGCTGCC 3.9 0.0039 P0.5 retina CCCTCACCCA (2) 2 0.002 P0.5 retina GATGGAGATG (2) 2 0.002 P0.5 retina GCTGCCTTAG (2) 2 0.002 P0.5 retina GGCTGCCCTA 2 0.002 P0.5 retina GGGATGGGCC 2 0.002 P0.5 retina GTAGACAATG 2 0.002 P0.5 retina GTCACGATGT 2 0.002 P2.5 retina GCTGCCCTAG (2) 123.2 0.1232 P2.5 retina TGCTGCCATT (2) 14.1 0.0141 P2.5 retina GTCACGATGT 5.3 0.0053 P2.5 retina GCATCCAGCC 1.8 0.0018 P2.5 retina GCTGCCCTAA (2) 1.8 0.0018 P2.5 retina GCTGCCTTAG (2) 1.8 0.0018 P2.5 retina GGACATTTAA 1.8 0.0018 P2.5 retina GGCTGCCCTA 1.8 0.0018 P2.5 retina GTAGACAATG 1.8 0.0018 P2.5 retina GTTGCCCTAG 1.8 0.0018 P4.5 retina GCTGCCCTAG (2) 99.1 0.0991 P4.5 retina TGCTGCCATT (2) 5.9 0.0059 P4.5 retina GCTGCCCTAA (2) 4 0.004 P4.5 retina GGACATTTAA 4 0.004 P4.5 retina TCCTCACGGG 4 0.004 P4.5 retina CACACAGCTC 2 0.002 P4.5 retina GATGGAGATG (2) 2 0.002 P4.5 retina GTCACGATGT 2 0.002 P6.5 retina GCTGCCCTAG (2) 161.7 0.1617 P6.5 retina GAAAGGAGGG 3.3 0.0033 P6.5 retina GCTGCCCTAA (2) 3.3 0.0033 P6.5 retina TGCTGCCATT (2) 3.3 0.0033 P6.5 retina GATGGAGATG (2) 1.7 0.0017 P6.5 retina GCATCCAGCC 1.7 0.0017 P6.5 retina GCTGCCTAGA 1.7 0.0017 P6.5 retina GCTTGCTGCC 1.7 0.0017 P6.5 retina GTAGACAATG 1.7 0.0017 P6.5 retina GTCACGATGT 1.7 0.0017 P6.5 retina TCCTCACGGG 1.7 0.0017 P10.5 crx- retina GCTGCCCTAG (2) 366 0.366 P10.5 crx- retina GCTGCCCTAA (2) 9.3 0.0093 P10.5 crx- retina GCTTGCTGCC 5.6 0.0056 P10.5 crx- retina TCCTCACGGG 3.7 0.0037 P10.5 crx- retina TTGGCCAGGC 3.7 0.0037 P10.5 crx- retina AGGAGGTGAG 1.9 0.0019 P10.5 crx- retina GCATCCAGCC 1.9 0.0019 P10.5 crx- retina GCTGCCTTAG (2) 1.9 0.0019 P10.5 crx- retina GGCTGCCCTA 1.9 0.0019 P10.5 crx- retina GTAGACAATG 1.9 0.0019 P10.5 crx- retina TGCCCCCGGG 1.9 0.0019 P10.5 crx+ retina GCTGCCCTAG (2) 173 0.173 P10.5 crx+ retina GCTGCCCTAA (2) 7.7 0.0077 P10.5 crx+ retina GCTTGCTGCC 3.8 0.0038 P10.5 crx+ retina AGCAGCTTTC 1.9 0.0019 P10.5 crx+ retina GTCACGATGT 1.9 0.0019 P10.5 crx+ retina GTTGCCCTAG 1.9 0.0019 P10.5 crx+ retina TTGGCCAGGC 1.9 0.0019 Adult retinal GCTGCCCTAG (2) 55.5 0.0555 Adult retinal ATGAACACTG (9) 11.1 0.0111 Adult retinal ATGAGCAACA 3.7 0.0037 Adult retinal GTAGACAATG 1.9 0.0019 Adult retinal GTTGCCCTAG 1.9 0.0019 ONL GCTGCCCTAG (2) 26.8 0.0268 ONL ATGAACACTG (9) 13.4 0.0134 ONL ATGAGCAACA 3.8 0.0038 ONL GCTGCCTAGA 1.9 0.0019 ONL GCTGTCCTAG (2) 1.9 0.0019 ONL GTCACGATGT 1.9 0.0019