Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.333388	Chd4	chromodomain helicase DNA binding protein 4	6	6 58.4 cM	107932
Gene Ontology	ATP binding | ATP dependent helicase activity | chromatin | chromatin assembly/disassembly | chromatin binding | chromatin modification | DNA binding | helicase activity | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent
Human Homolog	CHD4[chromodomain helicase DNA binding protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCGAACTGG 9.8 0.0098 P8 Cb GC TGCAGGAGCT 8.2 0.0082 P8 Cb GC CGTCAGGAGG 3.3 0.0033 P8 Cb GC CTTGGCTGCA 3.3 0.0033 P8 Cb GC AATGAATATT (2) 1.6 0.0016 P8 Cb GC TCTTACTGGC (2) 1.6 0.0016 P8 Cb GC TGGAAATGAA 1.6 0.0016 P8 GC+1d culture TGCAGGAGCT 16 0.016 P8 GC+1d culture GCGGGCGGGC (2) 2.3 0.0023 P8 GC+1d culture CCCGAACTGG 1.1 0.0011 P8 GC+1d culture TCTTACTGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture TGCAGGAGCT 21.1 0.0211 P8 GC+SHH+1d culture GCGGGCGGGC (2) 3.5 0.0035 P8 GC+SHH+1d culture TCTTACTGGC (2) 3.5 0.0035 P8 GC+SHH+1d culture TGGAAATGAA 2.3 0.0023 P8 GC+SHH+1d culture CCCGAACTGG 1.2 0.0012 3T3 fibroblasts TGCAGGAGCT 17.5 0.0175 3T3 fibroblasts CCCGAACTGG 10.5 0.0105 3T3 fibroblasts GTGACAGCTA (3) 10.5 0.0105 3T3 fibroblasts GCGGGCGGGC (2) 3.5 0.0035 E15 cortex CCCGAACTGG 19.8 0.0198 E15 cortex AATGAATATT (2) 9.9 0.0099 E15 cortex GTGACAGCTA (3) 9.9 0.0099 E15 cortex TGCAGGAGCT 9.9 0.0099 P1 cortex TGCAGGAGCT 9.1 0.0091 P1 cortex AATGAATATT (2) 4.5 0.0045 Hypothalamus TGCAGGAGCT 3.6 0.0036 Hypothalamus GCGGGCGGGC (2) 1.8 0.0018 E12.5 retina TGCAGGAGCT 9.4 0.0094 E12.5 retina CCCGAACTGG 1.9 0.0019 E12.5 retina TCTTACTGGC (2) 1.9 0.0019 E14.5 retina TGCAGGAGCT 5.5 0.0055 E14.5 retina CCCGAACTGG 3.6 0.0036 E14.5 retina GCGGGCGGGC (2) 1.8 0.0018 E16.5 retina TGCAGGAGCT 16.3 0.0163 E16.5 retina GCGGGCGGGC (2) 9.1 0.0091 E16.5 retina TTTATTGATT 5.4 0.0054 E16.5 retina CTTGGCTGCA 1.8 0.0018 E18.5 retina TGCAGGAGCT 3.6 0.0036 E18.5 retina CCCGAACTGG 1.8 0.0018 E18.5 retina CTTGGCTGCA 1.8 0.0018 E18.5 retina GCGGGCGGGC (2) 1.8 0.0018 P0.5 retina TGCAGGAGCT 17.7 0.0177 P2.5 retina TGCAGGAGCT 7 0.007 P2.5 retina CCCGAACTGG 3.5 0.0035 P2.5 retina CTTGGCTGCA 1.8 0.0018 P2.5 retina GCGGGCGGGC (2) 1.8 0.0018 P2.5 retina TCTTACTGGC (2) 1.8 0.0018 P2.5 retina TTTATTGATT 1.8 0.0018 P4.5 retina TGCAGGAGCT 5.9 0.0059 P4.5 retina CCCGAACTGG 4 0.004 P4.5 retina GCGGGCGGGC (2) 4 0.004 P4.5 retina CTTGGCTGCA 2 0.002 P4.5 retina GTGACAGCTA (3) 2 0.002 P6.5 retina TGCAGGAGCT 8.3 0.0083 P6.5 retina CTTGGCTGCA 1.7 0.0017 P6.5 retina TGGAAATGAA 1.7 0.0017 P10.5 crx- retina TGCAGGAGCT 13 0.013 P10.5 crx- retina GCGGGCGGGC (2) 7.4 0.0074 P10.5 crx- retina TCTTACTGGC (2) 3.7 0.0037 P10.5 crx- retina CGTCAGGAGG 1.9 0.0019 P10.5 crx- retina CTTGGCTGCA 1.9 0.0019 P10.5 crx+ retina TGCAGGAGCT 5.8 0.0058 P10.5 crx+ retina TCTTACTGGC (2) 1.9 0.0019 P10.5 crx+ retina TTTATTGATT 1.9 0.0019 Adult retinal TGCAGGAGCT 11.1 0.0111 Adult retinal TCTTACTGGC (2) 1.9 0.0019 ONL TGCAGGAGCT 3.8 0.0038 ONL TCTTACTGGC (2) 1.9 0.0019