Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40828	AI845619	expressed sequence AI845619	11		103846
Mm.40828	Sqstm1	sequestosome 1	11		18412
Gene Ontology	transcription cofactor activity
Human Homolog	SQSTM1[sequestosome 1] | SQSTM1[sequestosome 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 32 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGCTTCCTC (4) 26.1 0.0261 Cb medulloblastoma TAGCTTCCTC (4) 53.2 0.0532 Cb medulloblastoma GGAGGGGAAA (2) 2.3 0.0023 P8 GC+1d culture TAGCTTCCTC (4) 99.3 0.0993 P8 GC+1d culture AATTCTCCAT (4) 2.3 0.0023 P8 GC+SHH+1d culture TAGCTTCCTC (4) 57.4 0.0574 P8 GC+SHH+1d culture AGGAGAGTTT (4) 2.3 0.0023 P8 GC+SHH+1d culture GAGGGAAGAG (2) 1.2 0.0012 3T3 fibroblasts TAGCTTCCTC (4) 10.5 0.0105 E15 cortex TAGCTTCCTC (4) 9.9 0.0099 P1 cortex TAGCTTCCTC (4) 22.7 0.0227 Hypothalamus TAGCTTCCTC (4) 67 0.067 Hypothalamus AATTCTCCAT (4) 1.8 0.0018 E12.5 retina TAGCTTCCTC (4) 9.4 0.0094 E12.5 retina AGGAGAGTTT (4) 1.9 0.0019 E14.5 retina TAGCTTCCTC (4) 12.8 0.0128 E16.5 retina TAGCTTCCTC (4) 16.3 0.0163 E18.5 retina TAGCTTCCTC (4) 25.5 0.0255 P0.5 retina TAGCTTCCTC (4) 23.6 0.0236 P0.5 retina GAGGGAAGAG (2) 2 0.002 P2.5 retina TAGCTTCCTC (4) 31.7 0.0317 P4.5 retina TAGCTTCCTC (4) 45.6 0.0456 P4.5 retina GAGGGAAGAG (2) 2 0.002 P6.5 retina TAGCTTCCTC (4) 35 0.035 P10.5 crx- retina TAGCTTCCTC (4) 46.4 0.0464 P10.5 crx- retina AGGAGAGTTT (4) 1.9 0.0019 P10.5 crx- retina GAGGGAAGAG (2) 1.9 0.0019 P10.5 crx+ retina TAGCTTCCTC (4) 15.4 0.0154 P10.5 crx+ retina GGAGGGGAAA (2) 1.9 0.0019 Adult retinal TAGCTTCCTC (4) 25.9 0.0259 Adult retinal AGGAGAGTTT (4) 1.9 0.0019 ONL TAGCTTCCTC (4) 21.1 0.0211