Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.42944	Skp1a	S-phase kinase-associated protein 1A	11	11 31.0 cM	21402
Gene Ontology	kinase activity | protein binding | SCF ubiquitin ligase complex | translation elongation factor activity
Human Homolog	SKP1A[S-phase kinase-associated protein 1A (p19A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 123 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGGTGTCTT 39.2 0.0392 P8 Cb GC TGTAGTTCCA 6.5 0.0065 P8 Cb GC CAAGACTGTG 3.3 0.0033 P8 Cb GC TAAAAATTAA (2) 3.3 0.0033 P8 Cb GC TGGTCCCAGT 1.6 0.0016 P8 Cb GC TTATTTCTTC (2) 1.6 0.0016 P8 Cb GC TTGGGTGGAT (2) 1.6 0.0016 Cb medulloblastoma TGGGTGTCTT 30.1 0.0301 Cb medulloblastoma AAGTAAGTGT 13.9 0.0139 Cb medulloblastoma TAAAAATTAA (2) 11.6 0.0116 Cb medulloblastoma TGTAGTTCCA 4.6 0.0046 Cb medulloblastoma TTGGGTGGAT (2) 4.6 0.0046 Cb medulloblastoma CAAGACTGTG 2.3 0.0023 Cb medulloblastoma TGGTAGTTCC (4) 2.3 0.0023 P8 GC+1d culture TGGGTGTCTT 24 0.024 P8 GC+1d culture TGTAGTTCCA 11.4 0.0114 P8 GC+1d culture TAAAAATTAA (2) 6.8 0.0068 P8 GC+1d culture AAGTAAGTGT 3.4 0.0034 P8 GC+1d culture TGGTAGTTCC (4) 3.4 0.0034 P8 GC+1d culture TTGGGTGGAT (2) 3.4 0.0034 P8 GC+1d culture CAAGACTGTG 1.1 0.0011 P8 GC+SHH+1d culture TGGGTGTCTT 32.8 0.0328 P8 GC+SHH+1d culture TGTAGTTCCA 8.2 0.0082 P8 GC+SHH+1d culture AAGTAAGTGT 4.7 0.0047 P8 GC+SHH+1d culture TAAAAATTAA (2) 3.5 0.0035 P8 GC+SHH+1d culture TGGTAGTTCC (4) 2.3 0.0023 P8 GC+SHH+1d culture CAAGACTGTG 1.2 0.0012 P8 GC+SHH+1d culture TTATTTCTTC (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGGGTGGAT (2) 1.2 0.0012 3T3 fibroblasts TGGGTGTCTT 42.1 0.0421 3T3 fibroblasts AAGTAAGTGT 3.5 0.0035 3T3 fibroblasts TGGTAGTTCC (4) 3.5 0.0035 E15 cortex TAAAAATTAA (2) 14.8 0.0148 E15 cortex TGTAGTTCCA 9.9 0.0099 E15 cortex AAGTAAGTGT 4.9 0.0049 E15 cortex TGGGTGTCTT 4.9 0.0049 E15 cortex TGGTAGTTCC (4) 4.9 0.0049 P1 cortex TGGGTGTCTT 22.7 0.0227 P1 cortex AAGTAAGTGT 18.2 0.0182 P1 cortex TGTAGTTCCA 4.5 0.0045 Hypothalamus TGGGTGTCTT 38 0.038 Hypothalamus TGTAGTTCCA 9.1 0.0091 Hypothalamus TAAAAATTAA (2) 5.4 0.0054 Hypothalamus TTGGGTGGAT (2) 5.4 0.0054 Hypothalamus AAGTAAGTGT 3.6 0.0036 Hypothalamus TGGTAGTTCC (4) 3.6 0.0036 E12.5 retina TGGGTGTCTT 16.9 0.0169 E12.5 retina TGTAGTTCCA 13.1 0.0131 E12.5 retina TTGGGTGGAT (2) 3.8 0.0038 E12.5 retina AAGTAAGTGT 1.9 0.0019 E12.5 retina CTGGAAGAAA 1.9 0.0019 E12.5 retina CTGGAAGATT 1.9 0.0019 E14.5 retina TAAAAATTAA (2) 10.9 0.0109 E14.5 retina TGTAGTTCCA 5.5 0.0055 E14.5 retina TGGTAGTTCC (4) 3.6 0.0036 E14.5 retina AAGTAAGTGT 1.8 0.0018 E14.5 retina TGGGTGTCTT 1.8 0.0018 E14.5 retina TTATTTCTTC (2) 1.8 0.0018 E16.5 retina TGTAGTTCCA 9.1 0.0091 E16.5 retina AAGTAAGTGT 7.2 0.0072 E16.5 retina TAAAAATTAA (2) 3.6 0.0036 E16.5 retina TGGGTGTCTT 3.6 0.0036 E16.5 retina TTGGGTGGAT (2) 3.6 0.0036 E16.5 retina TGGTAGTTCC (4) 1.8 0.0018 E16.5 retina TTATTTCTTC (2) 1.8 0.0018 E18.5 retina TGGGTGTCTT 21.8 0.0218 E18.5 retina TAAAAATTAA (2) 10.9 0.0109 E18.5 retina TGTAGTTCCA 9.1 0.0091 E18.5 retina AAGTAAGTGT 1.8 0.0018 E18.5 retina CAAGACTGTG 1.8 0.0018 E18.5 retina CTGGAAGATT 1.8 0.0018 E18.5 retina TGGTAGTTCC (4) 1.8 0.0018 E18.5 retina TGGTCCCAGT 1.8 0.0018 E18.5 retina TTATTTCTTC (2) 1.8 0.0018 P0.5 retina TGGGTGTCTT 15.7 0.0157 P0.5 retina TGTAGTTCCA 11.8 0.0118 P0.5 retina AAGTAAGTGT 5.9 0.0059 P0.5 retina CAAGACTGTG 2 0.002 P0.5 retina CTGGAAGAAA 2 0.002 P0.5 retina TGGTAGTTCC (4) 2 0.002 P0.5 retina TTATTTCTTC (2) 2 0.002 P2.5 retina TGGGTGTCTT 21.1 0.0211 P2.5 retina TGTAGTTCCA 5.3 0.0053 P2.5 retina AAGTAAGTGT 3.5 0.0035 P2.5 retina CAAGACTGTG 1.8 0.0018 P2.5 retina TAAAAATTAA (2) 1.8 0.0018 P2.5 retina TGGTAGTTCC (4) 1.8 0.0018 P2.5 retina TGGTCCCAGT 1.8 0.0018 P2.5 retina TTATTTCTTC (2) 1.8 0.0018 P4.5 retina TGGGTGTCTT 19.8 0.0198 P4.5 retina TGTAGTTCCA 11.9 0.0119 P4.5 retina TAAAAATTAA (2) 4 0.004 P4.5 retina AAGTAAGTGT 2 0.002 P4.5 retina CAAGACTGTG 2 0.002 P4.5 retina TGGTAGTTCC (4) 2 0.002 P6.5 retina TGGGTGTCTT 8.3 0.0083 P6.5 retina TGTAGTTCCA 6.7 0.0067 P6.5 retina CAAGACTGTG 5 0.005 P6.5 retina TAAAAATTAA (2) 1.7 0.0017 P6.5 retina TTATTTCTTC (2) 1.7 0.0017 P6.5 retina TTTGGTTGAT (3) 1.7 0.0017 P10.5 crx- retina TGGGTGTCTT 13 0.013 P10.5 crx- retina AAGTAAGTGT 11.1 0.0111 P10.5 crx- retina TGTAGTTCCA 3.7 0.0037 P10.5 crx- retina CTGGAAGATT 1.9 0.0019 P10.5 crx- retina TAAAAATTAA (2) 1.9 0.0019 P10.5 crx- retina TGGTAGTTCC (4) 1.9 0.0019 P10.5 crx- retina TTGGGTGGAT (2) 1.9 0.0019 P10.5 crx+ retina TGGGTGTCTT 26.9 0.0269 P10.5 crx+ retina TGTAGTTCCA 13.5 0.0135 P10.5 crx+ retina AAGTAAGTGT 5.8 0.0058 P10.5 crx+ retina TGGTAGTTCC (4) 3.8 0.0038 P10.5 crx+ retina TTGGGTGGAT (2) 1.9 0.0019 P10.5 crx+ retina TTTGGTTGAT (3) 1.9 0.0019 Adult retinal TGGGTGTCTT 13 0.013 Adult retinal AAGTAAGTGT 1.9 0.0019 Adult retinal TGTAGTTCCA 1.9 0.0019 Adult retinal TTATTTCTTC (2) 1.9 0.0019 Adult retinal TTTGGTTGAT (3) 1.9 0.0019 ONL CTGGAAGAAA 5.7 0.0057 ONL TGGGTGTCTT 5.7 0.0057 ONL TGTAGTTCCA 5.7 0.0057 ONL TTGGGTGGAT (2) 3.8 0.0038