Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7723	Pabpn1	poly(A) binding protein, nuclear 1	14	14 19.5 cM	54196
Gene Ontology	mRNA polyadenylation | mRNA processing | nucleic acid binding | nucleus | poly(A) binding | RNA binding
Human Homolog	PABPN1[poly(A) binding protein, nuclear 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 49 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTATTCCCCT 27.7 0.0277 P8 Cb GC ATGTCGCTCT 3.3 0.0033 Cb medulloblastoma GTATTCCCCT 9.2 0.0092 Cb medulloblastoma ATGTCGCTCT 2.3 0.0023 P8 GC+1d culture GTATTCCCCT 5.7 0.0057 P8 GC+1d culture GACACATCTC 3.4 0.0034 P8 GC+SHH+1d culture GTATTCCCCT 7 0.007 P8 GC+SHH+1d culture ATGTCGCTCT 1.2 0.0012 3T3 fibroblasts GTATTCCCCT 7 0.007 3T3 fibroblasts GGGAGGGTCT 3.5 0.0035 E15 cortex GTATTCCCCT 9.9 0.0099 E15 cortex ATGTCGCTCT 4.9 0.0049 P1 cortex GTATTCCCCT 50 0.05 Hypothalamus GTATTCCCCT 18.1 0.0181 Hypothalamus GACACATCTC 9.1 0.0091 Hypothalamus ATGTCGCTCT 1.8 0.0018 E12.5 retina GTATTCCCCT 26.3 0.0263 E12.5 retina GACACATCTC 1.9 0.0019 E14.5 retina GTATTCCCCT 34.6 0.0346 E14.5 retina ATGTCGCTCT 5.5 0.0055 E14.5 retina GGCCCGCAAC 1.8 0.0018 E14.5 retina GGGAGGGTCT 1.8 0.0018 E16.5 retina GTATTCCCCT 52.5 0.0525 E16.5 retina ATGTCGCTCT 9.1 0.0091 E16.5 retina GGCCCGCAAC 1.8 0.0018 E18.5 retina GTATTCCCCT 40 0.04 E18.5 retina ATGTCGCTCT 1.8 0.0018 P0.5 retina GTATTCCCCT 17.7 0.0177 P0.5 retina ATGTCGCTCT 3.9 0.0039 P2.5 retina GTATTCCCCT 26.4 0.0264 P2.5 retina GACACATCTC 7 0.007 P2.5 retina ATGTCGCTCT 1.8 0.0018 P4.5 retina GTATTCCCCT 31.7 0.0317 P4.5 retina GACACATCTC 5.9 0.0059 P4.5 retina ATGTCGCTCT 4 0.004 P6.5 retina GTATTCCCCT 26.7 0.0267 P6.5 retina ATGTCGCTCT 1.7 0.0017 P6.5 retina GACACATCTC 1.7 0.0017 P6.5 retina GGGAGGGTCT 1.7 0.0017 P10.5 crx- retina GTATTCCCCT 16.7 0.0167 P10.5 crx- retina ATGTCGCTCT 1.9 0.0019 P10.5 crx+ retina GTATTCCCCT 23.1 0.0231 P10.5 crx+ retina GACACATCTC 3.8 0.0038 P10.5 crx+ retina GGCCCGCAAC 1.9 0.0019 Adult retinal GTATTCCCCT 9.3 0.0093 Adult retinal ATGTCGCTCT 3.7 0.0037 Adult retinal GACACATCTC 3.7 0.0037 ONL GTATTCCCCT 17.2 0.0172 ONL GACACATCTC 1.9 0.0019