| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GAGAACTGGT GTCCCCTCAG (3) TATGTACACA
| 13 | 0.013 |
| Cb medulloblastoma | AAGGGAGCTG (2) GAAGGGAGGC (2) GAGAACTGGT GCAGTGTCCA TATGTACACA
| 18.4 | 0.0184 |
| P8 GC+1d culture | GAGAACTGGT TAAAGTCAGG TATGTACACA
| 9.1 | 0.0091 |
| P8 GC+SHH+1d culture | GAAGATGGCA GAGAACTGGT GTCCCCTCAG (3) GTTTTTGTTA (3) TAAAGTCAGG TATGTACACA
| 16.4 | 0.0164 |
| 3T3 fibroblasts | TATGTACACA
| 3.5 | 0.0035 |
| E15 cortex | GAAGGGAGGC (2) GCCTTTTGCC TCCGGCACTA
| 14.7 | 0.0147 |
| P1 cortex | GAGAACTGGT GTCCCCTCAG (3) TATGTACACA
| 18.1 | 0.0181 |
| Hypothalamus | GAGAACTGGT GTTTTTGTTA (3) TATGTACACA
| 18.1 | 0.0181 |
| E12.5 retina | TAAAGTCAGG TATGTACACA
| 9.4 | 0.0094 |
| E14.5 retina | GAAGATGGCA GAGAACTGGT GTCCCCTCAG (3) TATGTACACA TCCGGCACTA
| 16.3 | 0.0163 |
| E16.5 retina | GAGAACTGGT TATGTACACA TCCGGCACTA
| 19.9 | 0.0199 |
| E18.5 retina | GAGAACTGGT TATGTACACA TCCGGCACTA
| 14.5 | 0.0145 |
| P0.5 retina | GAAGGGAGGC (2) GCCTTTTGCC TAAAGTCAGG TATGTACACA
| 15.8 | 0.0158 |
| P2.5 retina | GTTTTTGTTA (3) TAAAGTCAGG
| 7 | 0.007 |
| P4.5 retina | GAAGATGGCA GAGAACTGGT GTCCCCTCAG (3) TATGTACACA TCCGGCACTA
| 10 | 0.01 |
| P6.5 retina | GAAGGGAGGC (2) GAGAACTGGT GCAGTGTCCA GCCTTTTGCC GTTTTTGTTA (3) TAAAGTCAGG TATGTACACA TCCGGCACTA
| 25 | 0.025 |
| P10.5 crx- retina | GAAGGGAGGC (2) GAGAACTGGT GCAGTGTCCA GCCTTTTGCC TATGTACACA
| 9.5 | 0.0095 |
| P10.5 crx+ retina | AAGGGAGCTG (2) GAAGATGGCA GAGAACTGGT GTCCCCTCAG (3) TAAAGTCAGG TATGTACACA
| 11.4 | 0.0114 |
| Adult retinal | AAGGGAGCTG (2) GAAGGGAGGC (2) GCCTTTTGCC TAAAGTCAGG TATGTACACA TCCGGCACTA
| 22.4 | 0.0224 |
| ONL | GAAGGGAGGC (2) GCAGTGTCCA GCCTTTTGCC TAAAGTCAGG TATGTACACA
| 21 | 0.021 |