| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) TTTTTGAATA (2)
| 205.5 | 0.2055 |
| Cb medulloblastoma | AAAAAAAAAA (2) AATTGTTGAC
| 800.1 | 0.8001 |
| P8 GC+1d culture | AAAAAAAAAA (2) GACCTATTTC (2) TATTTATTTG TTTTTGAATA (2)
| 209.9 | 0.2099 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) GGTACTGAAA (2) TATTTATTTG
| 281.1 | 0.2811 |
| 3T3 fibroblasts | AAAAAAAAAA (2) TTTTTGAATA (2)
| 31.5 | 0.0315 |
| E15 cortex | AAAAAAAAAA (2) AGCCCCTGGG
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2)
| 245.4 | 0.2454 |
| Hypothalamus | AAAAAAAAAA (2) AATTGTTGAC GGTACTGAAA (2)
| 126.8 | 0.1268 |
| E12.5 retina | AAAAAAAAAA (2) AATTGTTGAC TTTTTGAATA (2)
| 142.7 | 0.1427 |
| E14.5 retina | AAAAAAAAAA (2) AGCCCCTGGG GGTACTGAAA (2) TATTTATTTG
| 101.9 | 0.1019 |
| E16.5 retina | AAAAAAAAAA (2) TTTTTGAATA (2)
| 45.3 | 0.0453 |
| E18.5 retina | AAAAAAAAAA (2) AAACTACCTG (3)
| 376.5 | 0.3765 |
| P0.5 retina | AAAAAAAAAA (2) AAACTACCTG (3) GACCTATTTC (2)
| 121.8 | 0.1218 |
| P2.5 retina | AAAAAAAAAA (2) GACCTATTTC (2) GGTACTGAAA (2)
| 332.7 | 0.3327 |
| P4.5 retina | AAAAAAAAAA (2) AATTGTTGAC TATTTATTTG TTTTTGAATA (2)
| 293.3 | 0.2933 |
| P6.5 retina | AAAAAAAAAA (2)
| 266.8 | 0.2668 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAACTACCTG (3) AGCCCCTGGG
| 48.4 | 0.0484 |
| P10.5 crx+ retina | AAAAAAAAAA (2) TTTTTGAATA (2)
| 98 | 0.098 |
| Adult retinal | AAAAAAAAAA (2) GGTACTGAAA (2)
| 59.3 | 0.0593 |
| ONL | AAAAAAAAAA (2)
| 103.4 | 0.1034 |