| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AGGAGAAATG (2)
| 205.5 | 0.2055 |
| Cb medulloblastoma | AAAAAAAAAA (2)
| 797.8 | 0.7978 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAGTCAAAA (2) AGGAGAAATG (2) GCTGGGATTT (2)
| 208.8 | 0.2088 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAGTCAAAA (2) AAATTCAAAT (2)
| 281.1 | 0.2811 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2) AAAGTCAAAT AGGAGAAATG (2) GAAATATAAC
| 227.5 | 0.2275 |
| P1 cortex | AAAAAAAAAA (2) AAAGTCAAAT
| 249.9 | 0.2499 |
| Hypothalamus | AAAAAAAAAA (2) AAAGTCAAAT AGGAGAAATG (2)
| 128.6 | 0.1286 |
| E12.5 retina | AAAAAAAAAA (2) AAAGTCAAAA (2) AAATTCAAAT (2) AGGAGAAATG (2)
| 144.6 | 0.1446 |
| E14.5 retina | AAAAAAAAAA (2) AAAGTCAAAT AGGAGAAATG (2)
| 101.9 | 0.1019 |
| E16.5 retina | AAAAAAAAAA (2) AAAGTCAAAA (2) AAAGTCAAAT AGGAGAAATG (2)
| 52.5 | 0.0525 |
| E18.5 retina | AAAAAAAAAA (2) GAAATATAAC GCTGGGATTT (2)
| 378.3 | 0.3783 |
| P0.5 retina | AAAAAAAAAA (2)
| 117.8 | 0.1178 |
| P2.5 retina | AAAAAAAAAA (2) AAAGTCAAAA (2) AAAGTCAAAT
| 332.7 | 0.3327 |
| P4.5 retina | AAAAAAAAAA (2) AAAGTCAAAT AGGAGAAATG (2) GCTGGGATTT (2)
| 291.3 | 0.2913 |
| P6.5 retina | AAAAAAAAAA (2) GAAATATAAC
| 268.5 | 0.2685 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAAGTCAAAT
| 46.5 | 0.0465 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AAAGTCAAAA (2) AAAGTCAAAT
| 101.8 | 0.1018 |
| Adult retinal | AAAAAAAAAA (2)
| 57.4 | 0.0574 |
| ONL | AAAAAAAAAA (2) AAAGTCAAAT AAATTCAAAT (2)
| 107.2 | 0.1072 |