Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.119	Nr4a1	nuclear receptor subfamily 4, group A, member 1	15		15370
Gene Ontology	DNA binding | inhibition of caspase activation | ligand-dependent nuclear receptor activity | nucleus | receptor activity | regulation of transcription, DNA-dependent | steroid hormone receptor activity | transcription factor activity
Human Homolog	NR4A1[nuclear receptor subfamily 4, group A, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 64 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGAAGGAAG (3) TAAAAAAAAA (3) TGTACATAAC 53.8 0.0538 Cb medulloblastoma GACGGGTAAC GTGAAGGAAG (3) TAAAAAAAAA (3) TAGTTGAAAA TGTACATAAC 115.6 0.1156 P8 GC+1d culture GGGCCTGGGA GTGAAGGAAG (3) TAAAAAAAAA (3) TAGTTGAAAA TGTACATAAC 74.1 0.0741 P8 GC+SHH+1d culture GACGGGTAAC GTGAAGGAAG (3) GTGACTGATG (2) TAAAAAAAAA (3) TGTACATAAC 100.7 0.1007 3T3 fibroblasts GTGACTGATG (2) TAAAAAAAAA (3) TAGTTGAAAA 14 0.014 E15 cortex TAAAAAAAAA (3) 9.9 0.0099 P1 cortex GACGGGTAAC GTGACTGATG (2) TAAAAAAAAA (3) 59 0.059 Hypothalamus GACGGGTAAC GGGCCTGGGA TAAAAAAAAA (3) 41.6 0.0416 E12.5 retina GGGCCTGGGA GTGAAGGAAG (3) GTGACTGATG (2) TAAAAAAAAA (3) TAGTTGAAAA 35.7 0.0357 E14.5 retina GAAAATGAAA TAAAAAAAAA (3) 52.8 0.0528 E16.5 retina GACGGGTAAC GGGCCTGGGA GTGACTGATG (2) TAAAAAAAAA (3) TAGTTGAAAA 34.3 0.0343 E18.5 retina GACGGGTAAC GGGCCTGGGA TAAAAAAAAA (3) TAGTTGAAAA 118.2 0.1182 P0.5 retina GACGGGTAAC GGGCCTGGGA TAAAAAAAAA (3) 45.1 0.0451 P2.5 retina TAAAAAAAAA (3) 72.2 0.0722 P4.5 retina GAAAATGAAA TAAAAAAAAA (3) 124.8 0.1248 P6.5 retina GAAAATGAAA GTGAAGGAAG (3) TAAAAAAAAA (3) TAGTTGAAAA 71.7 0.0717 P10.5 crx- retina GACGGGTAAC GGGCCTGGGA GTGAAGGAAG (3) TAAAAAAAAA (3) TAGTTGAAAA TGTACATAAC 20.6 0.0206 P10.5 crx+ retina TAAAAAAAAA (3) 25 0.025 Adult retinal GACGGGTAAC TAAAAAAAAA (3) 20.4 0.0204 ONL TAAAAAAAAA (3) 28.7 0.0287