| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGCCAGAAGT GTAGAAACCC TCAGTAAAAA TCTTAGGTGA
| 11.3 | 0.0113 |
| Cb medulloblastoma | GAAGATGATG (2) GAGCATCACT TCAGTAAAAA TCAGTAGAAA (2)
| 16.1 | 0.0161 |
| P8 GC+1d culture | GAGCATCACT GGAGTCCCAG (2) TCAGTAAAAA
| 4.5 | 0.0045 |
| P8 GC+SHH+1d culture | AGCCAGAAGT GGAGTCCCAG (2) TCAGTAAAAA TCAGTAGAAA (2)
| 11.7 | 0.0117 |
| 3T3 fibroblasts | GCAGTCCCAG (3)
| 7 | 0.007 |
| E15 cortex | GAAGATGATG (2)
| 4.9 | 0.0049 |
| P1 cortex | GAGCATCACT GCAGTCCCAG (3) TCAGTAAAAA
| 13.5 | 0.0135 |
| Hypothalamus | GGAGTCCCAG (2)
| 1.8 | 0.0018 |
| E12.5 retina | AGCCAGAAGT GAGCATCACT GCAGTCCCAG (3) TCAGTAAAAA TCAGTAGAAA (2)
| 11.4 | 0.0114 |
| E14.5 retina | GGAGTCCCAG (2) TCAGTAAAAA
| 12.7 | 0.0127 |
| E16.5 retina | AGCCAGAAGT GAAGATGATG (2) GAGCATCACT GTAGAAACCC TCAGTAAAAA
| 14.4 | 0.0144 |
| E18.5 retina | TCAGTAAAAA TCAGTAGAAA (2)
| 11 | 0.011 |
| P2.5 retina | GTAGAAACCC TCAGTAAAAA
| 7.1 | 0.0071 |
| P4.5 retina | GGAGTCCCAG (2) TCAGTAAAAA
| 9.9 | 0.0099 |
| P6.5 retina | TCAGTAAAAA TCAGTAGAAA (2)
| 6.7 | 0.0067 |
| P10.5 crx- retina | GCAGTCCCAG (3) TCAGTAAAAA TCTTAGGTGA
| 9.3 | 0.0093 |
| P10.5 crx+ retina | AGCCAGAAGT TCAGTAAAAA
| 3.8 | 0.0038 |
| Adult retinal | AGCCAGAAGT GCAGTCCCAG (3) TCAGTAAAAA
| 13 | 0.013 |
| ONL | TCAGTAAAAA
| 7.7 | 0.0077 |