| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGCAGATCAG AGCCGGCCAA GGGGGGGGCA
| 14.7 | 0.0147 |
| Cb medulloblastoma | AGCAAAAAAA (2) AGCCGGCCAA
| 25.4 | 0.0254 |
| P8 GC+1d culture | AGCAAAAAAA (2) AGCAGAGAAA AGCAGATCAG AGCCGGCCAA GGGGGGGGCA
| 25 | 0.025 |
| P8 GC+SHH+1d culture | AGCAAAAAAA (2) AGCAGAAAAA (2) AGCAGAGAAA AGCCGGCCAA GGGGGGGGCA
| 20 | 0.02 |
| 3T3 fibroblasts | AGCCGGCCAA
| 7 | 0.007 |
| E15 cortex | AGCAAAAAAA (2) AGCCGGCCAA
| 9.8 | 0.0098 |
| P1 cortex | AGCCGGCCAA TTTTCTTTGG (3)
| 9 | 0.009 |
| Hypothalamus | ACGTTTGCAT AGCAAAAAAA (2)
| 7.2 | 0.0072 |
| E12.5 retina | ACGTTTGCAT AGCCGGCCAA TTTTCTTTGG (3)
| 7.6 | 0.0076 |
| E14.5 retina | AGCAAAAAAA (2) AGCAGAGAAA AGCCGGCCAA GAGGCAGGCA
| 16.4 | 0.0164 |
| E16.5 retina | GAGGCAGGCA
| 7.2 | 0.0072 |
| E18.5 retina | ACGTTTGCAT AGCAAAAAAA (2) AGCAGAAAAA (2) AGCAGAGAAA AGCCGGCCAA TTTTCTTTGG (3)
| 21.8 | 0.0218 |
| P0.5 retina | AGCCGGCCAA
| 2 | 0.002 |
| P2.5 retina | AGCAAAAAAA (2) AGCAGAAAAA (2) AGCAGAGAAA AGCCGGCCAA TTTTCTTTGG (3)
| 24.7 | 0.0247 |
| P4.5 retina | AGCAAAAAAA (2) AGCAGAGAAA AGCCGGCCAA
| 11.9 | 0.0119 |
| P6.5 retina | AGCAAAAAAA (2) AGCCGGCCAA GACACTCCTG
| 23.4 | 0.0234 |
| P10.5 crx- retina | AGCAGCAAGA AGCCGGCCAA
| 18.6 | 0.0186 |
| P10.5 crx+ retina | ACGTTTGCAT AGCAAAAAAA (2) AGCAGCAAGA AGCCGGCCAA GGGGGGGGCA
| 21.1 | 0.0211 |
| Adult retinal | AGCCGGCCAA GACACTCCTG TTTTCTTTGG (3)
| 9.4 | 0.0094 |
| ONL | AGCAAAAAAA (2) GGGGGGGGCA
| 3.8 | 0.0038 |