Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.130388	Col8a1	procollagen, type VIII, alpha 1	16		12837
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport | protein binding
Human Homolog	COL8A1[collagen, type VIII, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAACTCAAG (2) TAAAAAAAAA (3) TAAAAAAAAG 50.5 0.0505 Cb medulloblastoma GGAACTCAAG (2) GGAATGCCAG TAAAAAAAAA (3) TAAAAAAAAG 113.3 0.1133 P8 GC+1d culture AATAGATTTG GAAATGCCCT (4) GGAACTCAAG (2) TAAAAAAAAA (3) TACAAATAAA 74.1 0.0741 P8 GC+SHH+1d culture GGAACTCAAG (2) TAAAAAAAAA (3) TACAAATAAA 103.1 0.1031 3T3 fibroblasts AATAGATTTG TAAAAAAAAA (3) 10.5 0.0105 E15 cortex GGAACTCAAG (2) TAAAAAAAAA (3) 14.8 0.0148 P1 cortex GGAACTCAAG (2) TAAAAAAAAA (3) TAAAAAAAAG 59 0.059 Hypothalamus GGAACTCAAG (2) TAAAAAAAAA (3) 39.8 0.0398 E12.5 retina ACTTTCAATG GGAACTCAAG (2) TAAAAAAAAA (3) 30.1 0.0301 E14.5 retina GGAACTCAAG (2) GGAATGCCAG TAAAAAAAAA (3) 52.8 0.0528 E16.5 retina ACTTTCAATG GGAACTCAAG (2) TAAAAAAAAA (3) 34.3 0.0343 E18.5 retina GGAACTCAAG (2) GGAATGCCAG GGACTTTCCT GTAGAATATA TAAAAAAAAA (3) TACAAATAAA 123.6 0.1236 P0.5 retina GAAATGCCCT (4) GGAACTCAAG (2) TAAAAAAAAA (3) 43.2 0.0432 P2.5 retina ACTTTCAATG GGAACTCAAG (2) GGGAAGGAGA (2) GTAGAATATA TAAAAAAAAA (3) TAAAAAAAAG TACAAATAAA 88.2 0.0882 P4.5 retina GGAACTCAAG (2) TAAAAAAAAA (3) 128.7 0.1287 P6.5 retina AATAGATTTG ACTTTCAATG GAAATGCCCT (4) GGAACTCAAG (2) GGACTTTCCT TAAAAAAAAA (3) 78.5 0.0785 P10.5 crx- retina GGGAAGGAGA (2) GTAGAATATA TAAAAAAAAA (3) 13.1 0.0131 P10.5 crx+ retina GGAACTCAAG (2) GGGAAGGAGA (2) TAAAAAAAAA (3) 28.8 0.0288 Adult retinal GGAATGCCAG TAAAAAAAAA (3) 20.4 0.0204 ONL ACTTTCAATG GGAACTCAAG (2) GGACTTTCCT TAAAAAAAAA (3) 34.4 0.0344