Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.135581	Rpo1-4	RNA polymerase 1-4	6	6 31.2 cM	20019
Gene Ontology	DNA binding | DNA-directed RNA polymerase activity | DNA-directed RNA polymerase I complex | nucleus | protein binding | transcription | transferase activity
Human Homolog	POLR1A[polymerase (RNA) I polypeptide A, 194kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCAGTTTC CCTCAAAAAA (2) GCTGCTGAAA GTGGCCAGTG (2) TATGCTCCTT 13.1 0.0131 Cb medulloblastoma ATGCAGTTTC GCTGGAACTG (2) GTGGCCAGTG (2) 16.1 0.0161 P8 GC+1d culture GCTGGAACTG (2) GTGGCCAGTG (2) TATGCTCCTT 8 0.008 P8 GC+SHH+1d culture CCTCAAAAAA (2) GCTGCTGAAA GCTGGAACTG (2) GTGGCCAGTG (2) TATGCTCCTT 12.9 0.0129 3T3 fibroblasts GAAACCAGAT GTGGCCAGTG (2) 21 0.021 E15 cortex AGATGGCCAT (2) GAAACCAGAT GCTGGAACTG (2) GTGGCCAGTG (2) 34.5 0.0345 P1 cortex GCTGGAACTG (2) GTGGCCAGTG (2) 18.2 0.0182 Hypothalamus GCTGCTGAAA GCTGGAACTG (2) 7.2 0.0072 E12.5 retina AGATGGCCAT (2) CCTCAAAAAA (2) GCTGCTGAAA GCTGGAACTG (2) GGGGTTTGGA TATGCTCCTT 30.1 0.0301 E14.5 retina GCTGGAACTG (2) GGGGTTTGGA GTGGCCAGTG (2) 9.1 0.0091 E16.5 retina AGATGGCCAT (2) CCTCAAAAAA (2) GCTGGAACTG (2) TATGCTCCTT 12.6 0.0126 E18.5 retina AGATGGCCAT (2) GCTGGAACTG (2) 7.3 0.0073 P0.5 retina GCTGGAACTG (2) GTGGCCAGTG (2) TATGCTCCTT TGGTCAGGCA (2) 8 0.008 P2.5 retina CCTCAAAAAA (2) GCTGCTGAAA GCTGGAACTG (2) TGGTCAGGCA (2) 10.6 0.0106 P4.5 retina CCTCAAAAAA (2) GCTGGAACTG (2) 6 0.006 P6.5 retina CCTCAAAAAA (2) GAAACCAGAT GCTGGAACTG (2) TATGCTCCTT 10.1 0.0101 P10.5 crx- retina AGATGGCCAT (2) GCTGGAACTG (2) 3.8 0.0038 P10.5 crx+ retina AGATGGCCAT (2) CCTCAAAAAA (2) GCTGCTGAAA GCTGGAACTG (2) GGGGTTTGGA GTGGCCAGTG (2) 11.4 0.0114 Adult retinal GAAACCAGAT GCTGGAACTG (2) GTGGCCAGTG (2) TGGTCAGGCA (2) TTTCTGGAGA 11.3 0.0113 ONL CCTCAAAAAA (2) GTGGCCAGTG (2) TTTCTGGAGA 9.5 0.0095