| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AATAAAAAAA (3) ATAATAAAAG (2) GGGGCTCACA (4) GTGGCTCCCA
| 6.4 | 0.0064 |
| Cb medulloblastoma | AATAAAAAAA (3) GTGGCTCCCA TCAGGATCCA
| 11.5 | 0.0115 |
| P8 GC+1d culture | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 6.8 | 0.0068 |
| P8 GC+SHH+1d culture | AATAAAAAAA (3) GTGGCTCCCA TGAAAATGGA (3)
| 5.8 | 0.0058 |
| 3T3 fibroblasts | AATAAAAAAA (3) TCAGGATCCA
| 10.5 | 0.0105 |
| E15 cortex | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 64.2 | 0.0642 |
| P1 cortex | GGGGCTCACA (4) GTGGCTCCCA
| 31.8 | 0.0318 |
| Hypothalamus | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA TCAGGATCCA
| 56.1 | 0.0561 |
| E12.5 retina | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 56.4 | 0.0564 |
| E14.5 retina | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 72.9 | 0.0729 |
| E16.5 retina | GGGGCTCACA (4) GTGGCTCCCA
| 45.3 | 0.0453 |
| E18.5 retina | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 94.6 | 0.0946 |
| P0.5 retina | GGGGCTCACA (4) GTGGCTCCCA
| 47.1 | 0.0471 |
| P2.5 retina | ATAATAAAAG (2) GGGGCTCACA (4) GTGGCTCCCA
| 95 | 0.095 |
| P4.5 retina | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA TGAAAATGGA (3)
| 43.6 | 0.0436 |
| P6.5 retina | AATAAAAAAA (3) ATAATAAAAG (2) GGGGCTCACA (4) GTGGCTCCCA
| 63.4 | 0.0634 |
| P10.5 crx- retina | GGGGCTCACA (4) GTGGCTCCCA
| 39.1 | 0.0391 |
| P10.5 crx+ retina | GGGGCTCACA (4) GTGGCTCCCA TCAGGATCCA TGAAAATGGA (3)
| 32.6 | 0.0326 |
| Adult retinal | AATAAAAAAA (3) GGGGCTCACA (4) GTGGCTCCCA
| 48.2 | 0.0482 |
| ONL | GGGGCTCACA (4) GTGGCTCCCA TGAAAATGGA (3)
| 68.9 | 0.0689 |