Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.138792	Chd7	chromodomain helicase DNA binding protein 7	4		320790
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	CHD7[chromodomain helicase DNA binding protein 7]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 110 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) 22.8 0.0228 Cb medulloblastoma AAAAACATAA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) TCTCAAAAAA (3) 29.9 0.0299 P8 GC+1d culture AAAAACATAA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG TTTCTACCTC 58.1 0.0581 P8 GC+SHH+1d culture AAAAACATAA AAACTGAAGA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG TTTCTACCTC 49.1 0.0491 3T3 fibroblasts GGAGGTGGAG (2) 7 0.007 E15 cortex GGAGGTGGAG (2) 14.8 0.0148 Hypothalamus AAAAACATAA AAACTGAAGA ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) 30.7 0.0307 E12.5 retina AAACTGAAGA ATATGCAAAA GAGCCGCCAT (2) TCTTTTTAAG 24.4 0.0244 E14.5 retina AAACTGAAGA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) GGCTTCCCTC (3) TCTCAAAAAA (3) TCTTTTTAAG 36.2 0.0362 E16.5 retina AAACTGAAGA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG 30.6 0.0306 E18.5 retina ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG 25.5 0.0255 P0.5 retina ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TTTCTACCTC 23.7 0.0237 P2.5 retina AAACTGAAGA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG 28.3 0.0283 P4.5 retina AAAAACATAA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) GGCTTCCCTC (3) TCTCAAAAAA (3) TCTTTTTAAG 29.7 0.0297 P6.5 retina AAACTGAAGA ATATGCAAAA GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG 18.2 0.0182 P10.5 crx- retina AAACTGAAGA ATAGCAGTTT GAGCCGCCAT (2) GGAGGTGGAG (2) 18.6 0.0186 P10.5 crx+ retina AAACTGAAGA ATAGCAGTTT ATATGCAAAA GAGCCGCCAT (2) GGAGGTGGAG (2) TCTCAAAAAA (3) TTTCTACCTC 23 0.023 Adult retinal AAACTGAAGA ATAGCAGTTT ATATGCAAAA GGAGGTGGAG (2) GGCTTCCCTC (3) TCTCAAAAAA (3) 22.3 0.0223 ONL AAAAACATAA AAACTGAAGA ATAGCAGTTT ATATGCAAAA GGAGGTGGAG (2) TCTCAAAAAA (3) TCTTTTTAAG TTTCTACCTC 40.1 0.0401