| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 217 | 0.217 |
| Cb medulloblastoma | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 851 | 0.851 |
| P8 GC+1d culture | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 232.8 | 0.2328 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ATTGTTTGTG (2) TTAAAAAAAA (2)
| 315 | 0.315 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 259 | 0.259 |
| Hypothalamus | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 143.1 | 0.1431 |
| E12.5 retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 150.2 | 0.1502 |
| E14.5 retina | AAAAAAAAAA (2) ATTGTTTGTG (2) TTAAAAAAAA (2)
| 112.9 | 0.1129 |
| E16.5 retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 59.8 | 0.0598 |
| E18.5 retina | AAAAAAAAAA (2) ATTGTTTGTG (2) TTAAAAAAAA (2)
| 427.4 | 0.4274 |
| P0.5 retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 135.5 | 0.1355 |
| P2.5 retina | AAAAAAAAAA (2) ATTGTTTGTG (2) TTAAAAAAAA (2)
| 371.4 | 0.3714 |
| P4.5 retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 330.9 | 0.3309 |
| P6.5 retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 283.5 | 0.2835 |
| P10.5 crx- retina | AAAAAAAAAA (2) ATTGTTTGTG (2) TTAAAAAAAA (2)
| 59.5 | 0.0595 |
| P10.5 crx+ retina | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 101.9 | 0.1019 |
| Adult retinal | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 64.8 | 0.0648 |
| ONL | AAAAAAAAAA (2) TTAAAAAAAA (2)
| 111.1 | 0.1111 |