Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1451	Mfge8	milk fat globule-EGF factor 8 protein	7	7 41.2 cM	17304
Gene Ontology	cell adhesion | external side of plasma membrane | extracellular space | extracellular space | extrinsic to plasma membrane | fertilization (sensu Animalia) | integrin binding | phagocytosis, binding | phagocytosis, engulfment | phosphatidylethanolamine binding | phosphatidylserine binding | positive regulation of phagocytosis | protein binding
Human Homolog	AGC1[aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 205 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAGAAAGAA (2) GAAGGGCCAG (4) GAAGGTGCCT GCAACGAAAA (2) GGGAAGGCTG (2) GTCAACCCCA GTGCAGTTTG (2) TAATTTACCT 24.3 0.0243 Cb medulloblastoma AAAAAAAAGA GCAACGAAAA (2) GGGCTAGAGA GGGCTGCAGC GGGGGGGGGG TAATTTACCT TGCATCCTGT 25.3 0.0253 P8 GC+1d culture AAAAAAAAGA AAGGTTCACA AGAGAGAAGG GAAGAAAGAA (2) GAAGAGGGGG (2) GAAGGGCCAG (4) GAGGAATGTG (3) GCTCGCTCGT GGGCTAGAGA GGGGGGGGGG GTGCAGTTTG (2) TAATTTACCT TTCCATTCCG 34 0.034 P8 GC+SHH+1d culture AAAAAAAAGA AGCAGGAGCA GAAGAAAGAA (2) GAAGAGGGGG (2) GAAGGGCCAG (4) GAAGGTGCCT GCAACGAAAA (2) GCGCACCCCC GCTCGCTCGT GGCCTTGCAG GGGCTGCAGC GGGGGGGGGG GGGGGTGGGA GTGCAGTTTG (2) TAATTTACCT TTCCATTCCG 41 0.041 3T3 fibroblasts GAAGGGCCAG (4) GCGCACCCCC GCTCCCCCAA (3) GCTGGGGGCT (2) GGGGGGGGGG TTCCATTCCG 35 0.035 E15 cortex GAAGGGCCAG (4) GGGGGGGGGG TTCCATTCCG 24.6 0.0246 P1 cortex GAAGGTGCCT GGGGGTGGGA TACCAGAACA TTCCATTCCG 18 0.018 Hypothalamus ACAGCCAGCA GCTGGGGGCT (2) GGACAGAACA GGGCTGCAGC GGGGGGGGGG GGGGGTGGGA GTCAACCCCA GTGCAGTTTG (2) TAATTTACCT TGGGGGCTGG TTCCATTCCG 27 0.027 E12.5 retina AAAAAAAAGA AAGGTTCACA AGCAGGAGCA GAAGGGCCAG (4) GAAGGTGCCT GAGGAATGTG (3) GGCCTTGCAG GGGGGTGGGA GTCAACCCCA TAATTTACCT TGGGGGCTGG TTCCATTCCG 30.4 0.0304 E14.5 retina AAAAAAAAGA AAGGTTCACA AGCAGGAGCA GAAGGGCCAG (4) GAGGACACAA GCGCACCCCC GCTGCCAGAC GTCAACCCCA 19.9 0.0199 E16.5 retina AAGGTTCACA AGCAGGAGCA GAGGAATGTG (3) GCTCCCCCAA (3) GCTGCCAGAC GTCAACCCCA TAATTTACCT TTCCATTCCG 21.6 0.0216 E18.5 retina AAGGTTCACA GAAGAAAGAA (2) GAAGGGCCAG (4) GGGGGTGGGA TAATTTACCT TGCATCCTGT TTCCATTCCG 18.1 0.0181 P0.5 retina AAAAAAAAGA AAGGTTCACA GAAGAAAGAA (2) GAAGGGCCAG (4) GAAGGTGCCT GGCCTTGCAG GTCACAGTCA TAATTTACCT TGCATCCTGT TTCCATTCCG 35.4 0.0354 P2.5 retina AAAAAAAAGA AAGGTTCACA AGCAGGAGCA CCAAGCTTAT GAAGGGCCAG (4) GAAGGTGCCT GAGGAATGTG (3) GAGGACACAA GCTCCCCCAA (3) GGGGGGGGGG GGGGGTGGGA GTCAACCCCA GTGCAGTTTG (2) TAATTTACCT TGCATCCTGT 45.9 0.0459 P4.5 retina GAAGGGCCAG (4) GAAGGTGCCT GAGGAGGCAA GCTCCCCCAA (3) GGGCTGCAGC GGGGGGGGGG GGGGGTGGGA TAATTTACCT TACCAGAACA TGCATCCTGT TGGGGGCTGG TTCACCACAA 41.8 0.0418 P6.5 retina AAAAAAAAGA AAGGTTCACA ACAGCCAGCA AGAGAGAAGG CCAAGCTTAT GAAGAAAGAA (2) GAAGGGCCAG (4) GAAGGTGCCT GAGGAGGCAA GGGGGGGGGG GGGGGTGGGA GTCACAGTCA GTGCAGTTTG (2) TAATTTACCT TACCAGAACA TTCCATTCCG 55.1 0.0551 P10.5 crx- retina AAAAAAAAGA AAGGTTCACA GAAGAAAGAA (2) GAAGGTGCCT GAGGAATGTG (3) GTCAACCCCA GTGCAGTTTG (2) TAATTTACCT TTCCATTCCG 33.6 0.0336 P10.5 crx+ retina AAAAAAAAGA AAGGTTCACA AGCAGGAGCA CCAAGCTTAT GAAGAGGGGG (2) GAGGACACAA GCAACGAAAA (2) GCGCACCCCC GCTGCCAGAC GGGCTGCAGC GGGGGGGGGG TAATTTACCT TGCATCCTGT TTCACCACAA TTCCATTCCG 45.8 0.0458 Adult retinal AAGGTTCACA ACAGCCAGCA CCAAGCTTAT GAAGAAAGAA (2) GAAGGTGCCT GCGCACCCCC GGACAGAACA GGGAAGGCTG (2) GGGCTAGAGA GGGGGGGGGG TTCACCACAA TTCCATTCCG 48.5 0.0485 ONL AAGGTTCACA AGCAGGAGCA CCAAGCTTAT GAAGAAAGAA (2) GAGGAATGTG (3) GGGAAGGCTG (2) GGGCTAGAGA GGGGGGGGGG GGGGGTGGGA GTCACAGTCA TAATTTACCT TGCATCCTGT TTCCATTCCG 55.3 0.0553