Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.154662	Col9a1	procollagen, type IX, alpha 1	1	1 15.0 cM	12839
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL9A1[collagen, type IX, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 41 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAGGAAGGT 1.6 0.0016 P8 GC+1d culture TAAAATAAGG TCTGGTTGTA TTAATTGAAC 4.5 0.0045 P8 GC+SHH+1d culture TCTGGTTGTA 1.2 0.0012 3T3 fibroblasts GAAGGAAGGT TAAAATAAGG 7 0.007 Hypothalamus TAAAATAAGG 1.8 0.0018 E12.5 retina TAAAATAAGG TCTGGTTGTA TTAATTGAAC 35.8 0.0358 E14.5 retina CAGGGAGAAC GAAGGAAGGT TCTGGTTGTA TTAATTGAAC 21.8 0.0218 E16.5 retina GAAGGAAGGT TCTGGTTGTA TTAATTGAAC 19.9 0.0199 E18.5 retina TCTGGTTGTA TTAATTGAAC 16.4 0.0164 P0.5 retina GAAGGAAGGT TAAAATAAGG TTAATTGAAC 7.9 0.0079 P2.5 retina TAAAATAAGG TCTGGTTGTA TTAATTGAAC 10.6 0.0106 P4.5 retina TAAAATAAGG TCTGGTTGTA TTAATTGAAC 13.8 0.0138 P6.5 retina TAAAATAAGG TTAATTGAAC 6.7 0.0067 P10.5 crx- retina TCTGGTTGTA TTAATTGAAC 13 0.013 P10.5 crx+ retina TCTGGTTGTA TTAATTGAAC 19.2 0.0192 Adult retinal GAAGGAAGGT TAAAATAAGG TTAATTGAAC 7.5 0.0075 ONL CAGGGAGAAC TCTGGTTGTA TTAATTGAAC 11.4 0.0114