Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.16660	P4hb	prolyl 4-hydroxylase, beta polypeptide	11	11 80.0 cM	18453
Gene Ontology	electron transport | electron transporter activity | endoplasmic reticulum | extracellular space | isomerase activity | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | procollagen-proline 4-dioxygenase activity | procollagen-proline 4-dioxygenase activity | protein disulfide isomerase activity
Human Homolog	P4HB[procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 147 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTGTGCCC (2) GAGGAGGAGG (2) GCCTGTGGCC GTGGAAAAAA TGCTTGCTGC TGGCCTGAGT TGTGAACACA (5) 21.1 0.0211 Cb medulloblastoma ATTTGGGAAA (2) CAAGCAAAAA CTGGGCCGTG GCCTGTGGCC TGGCCTGAGT 39.3 0.0393 P8 GC+1d culture ATTTGGGAAA (2) CTGGGCCGTG GCCTGTGGCC GGAACACATC GTCACTGACA GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT 43.2 0.0432 P8 GC+SHH+1d culture CTGGGCCGTG GAGGAAGAAG (2) GAGGAAGACG GAGGAGGAGG (2) GCCTGTGGCC GTGTTGAAGA (2) TGGCCTGAGT 31.7 0.0317 3T3 fibroblasts CCCTGTGGCC (2) GAGGAAGACG GAGGAGGAGG (2) GCCTGTGGCC GCTTAGTAGT GGGGGGTGGG (4) GTCACTGACA 140.1 0.1401 E15 cortex ATTTGGGAAA (2) CCCTGTGGCC (2) CTGGAAAAAA GAGGAAGAAG (2) GAGGAGGAGG (2) GCCTGTGGCC TGGCCTGAGT 59.1 0.0591 P1 cortex CTGGGCCGTG GAGGAGGAGG (2) GCCTGTGGCC GGGGGGTGGG (4) GTGGAAAAAA GTGTTGAAGA (2) TGCTTGCTGC 40.6 0.0406 Hypothalamus CTGGGCCGTG GAGGAAGACG GAGGAGGAGG (2) GTGGAAAAAA TGGCCTGAGT 32.6 0.0326 E12.5 retina ATTTGGGAAA (2) CCCTGTGGCC (2) CTGGAAAAAA CTGGGCCGTG GAGGAGGAGG (2) GCCTGTGGCC GTCACTGACA GTGTTGAAGA (2) TGGCCTGAGT TGTGAACACA (5) TTGAAATGGC 39.6 0.0396 E14.5 retina CTGGAAAAGA (2) GCCTGTGGCC GGACAAATTC (2) GTCACTGACA GTGGAAAAAA 21.7 0.0217 E16.5 retina CCCTGTGCCC (2) CTGGGCCGTG GAGGAAGAAG (2) GCCTGTGGCC GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT TTGAAATGGC 48.8 0.0488 E18.5 retina CAAGCAAAAA CTGGAAAAAA CTGGAAAAGA (2) CTGGGCCGTG GCCTGTGGCC GGACAAATTC (2) GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT TGTGAACACA (5) TTGAAATGGC 41.7 0.0417 P0.5 retina CAAGCAAAAA CCCTGTGGCC (2) CTGGAAAAAA GCCTGTGGCC GCTTAGTAGT GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT 47.3 0.0473 P2.5 retina CTGGGCCGTG GAGGAAGACG GAGGAGGAGG (2) GCCTGTGGCC GTGTTGAAGA (2) TGGCCTGAGT TTGAAATGGC 38.8 0.0388 P4.5 retina CTGGAAAAAA GAGGAGGAGG (2) GCCTGTGGCC GTCACTGACA GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT TGTGAACACA (5) 49.6 0.0496 P6.5 retina CTGGAAAAGA (2) CTGGGCCGTG GCCTGTGGCC GGGGGGTGGG (4) GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT 48.3 0.0483 P10.5 crx- retina CCCTGTGCCC (2) GAGGAAGACG GAGGAGGAGG (2) GCCTGTGGCC GCTTAGTAGT GGAACACATC GTGTTGAAGA (2) TGGCCTGAGT 33.6 0.0336 P10.5 crx+ retina ATTTGGGAAA (2) GCCTGTGGCC GTCACTGACA GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT 57.7 0.0577 Adult retinal CTGGGCCGTG GAGGAGGAGG (2) GCCTGTGGCC GTGGAAAAAA GTGTTGAAGA (2) TGGCCTGAGT 31.7 0.0317 ONL ATTTGGGAAA (2) CTGGAAAAAA GAGGAGGAGG (2) GCCTGTGGCC GGAACACATC GGGGGGTGGG (4) GTGTTGAAGA (2) TGCTTGCTGC TGGCCTGAGT 40.1 0.0401