Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.173286	Tnpo1	transportin 1	13	13 53.0 cM	238799
Gene Ontology	cytoplasm | nuclear pore | nucleus | protein transport | protein transporter activity | protein-nucleus import, docking | transport
Human Homolog	TNPO1[transportin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGCAGCTGG (2) CAGAAAAAAA (2) CAGAGAATAT CTGATGAAGA (2) GATTTAAAAA GCTAGCTACA GTTTATTAAA (2) TATAGTGCCC TTTAAGCATC 27.6 0.0276 Cb medulloblastoma ATCCAAAACA CAGAAAAAAA (2) CAGAGAATAT GTTTATTAAA (2) TTTAAGCATC 18.4 0.0184 P8 GC+1d culture AAGCAGCTGG (2) CAGAAAAAAA (2) CAGAGAATAT CCGACGCGCC CTGATGAAGA (2) GCTAGCTACA GTTTATTAAA (2) TTTAAGCATC 21.6 0.0216 P8 GC+SHH+1d culture CAGAGAATAT GGGCACATAC GTTTATTAAA (2) TTAACATTGG 16.5 0.0165 3T3 fibroblasts ATGATGAAGG (2) CCGACGCGCC 7 0.007 P1 cortex CAGAGAATAT TCTCTATTAA 22.7 0.0227 Hypothalamus AAGCAGCTGG (2) GTTTATTAAA (2) 7.2 0.0072 E12.5 retina CAGAAAAAAA (2) CAGAGAATAT CTGATGAAGA (2) GATTTAAAAA GTTTATTAAA (2) TACAGCAAGG TTTAAGCATC TTTAATAAAG (6) 47.1 0.0471 E14.5 retina ATGATGAAGG (2) CAGAAAAAAA (2) CAGAGAATAT CTGATGAAGA (2) GGGCACATAC GTTTATTAAA (2) TAATTTGAAA TATAGTGCCC TTTAAGCATC TTTAATAAAG (6) 25.3 0.0253 E16.5 retina AGGAGGATGG CAGAGAATAT GGGCACATAC GTTTATTAAA (2) TCTCTATTAA TTAACATTGG TTTAAGCATC 16.2 0.0162 E18.5 retina CAGAAAAAAA (2) CAGAGAATAT GTTTATTAAA (2) TAATTTGAAA TTTAATAAAG (6) 16.3 0.0163 P0.5 retina CAGAAAAAAA (2) CAGAGAATAT CTGATGAAGA (2) GGGCACATAC GTTTATTAAA (2) TCTCTATTAA TTTAAGCATC 21.7 0.0217 P2.5 retina AAGCAGCTGG (2) CAGAAAAAAA (2) CAGAGAATAT CCGACGCGCC CTGATGAAGA (2) GCTAGCTACA GGGCACATAC GTTTATTAAA (2) TACAGCAAGG TTTAATAAAG (6) 33.5 0.0335 P4.5 retina AAGCAGCTGG (2) ATCCAAAACA CAGAAAAAAA (2) CAGAGAATAT CCGACGCGCC CTGATGAAGA (2) GATTTAAAAA GCTAGCTACA GTTTATTAAA (2) TCTCTATTAA TTTAAGCATC 47.7 0.0477 P6.5 retina AAGCAGCTGG (2) CAGAAAAAAA (2) CAGAGAATAT CCCTGATGCT CCGACGCGCC CTGATGAAGA (2) TTTAAGCATC 18.5 0.0185 P10.5 crx- retina CAGAAAAAAA (2) CAGAGAATAT CCCTGATGCT CTGATGAAGA (2) GGGCACATAC GTTTATTAAA (2) TCTCTATTAA TTAACATTGG TTTAAGCATC 26.2 0.0262 P10.5 crx+ retina CAGAAAAAAA (2) CAGAGAATAT CCGACGCGCC GCTAGCTACA GGGCACATAC TATAGTGCCC TTTAAGCATC 19.1 0.0191 Adult retinal CAGAGAATAT CCCTGATGCT GCTAGCTACA TCTCTATTAA TTTAAGCATC 20.4 0.0204 ONL AGGAGGATGG ATCCAAAACA ATGATGAAGG (2) CAGAGAATAT CCGACGCGCC CTGATGAAGA (2) GCTAGCTACA TAATTTGAAA TATAGTGCCC TCTCTATTAA 38.1 0.0381