| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ATATCCATTT (3) GCGGGGGGGG (2) TGTTTTGGAA
| 8.1 | 0.0081 |
| Cb medulloblastoma | AGTTTAAAAC (3) ATATCCATTT (3) GCGGGGGGGG (2) TGTTTTGGAA
| 25.4 | 0.0254 |
| P8 GC+1d culture | ATATCCATTT (3) TATTATTTAT (4) TGTTTTGGAA TTACAAAACA (4)
| 13.6 | 0.0136 |
| P8 GC+SHH+1d culture | ATATCCATTT (3) TGTTTTGGAA TTGTCACCTA (4)
| 9.4 | 0.0094 |
| 3T3 fibroblasts | TGTTTTGGAA
| 3.5 | 0.0035 |
| E15 cortex | TGTTTTGGAA
| 4.9 | 0.0049 |
| P1 cortex | TATTATTTAT (4)
| 4.5 | 0.0045 |
| Hypothalamus | ATATCCATTT (3) ATGGTGGAAA (3) TGTTTTGGAA TTGTCACCTA (4)
| 18.1 | 0.0181 |
| E12.5 retina | ATATCCATTT (3) GCGGGGGGGG (2) TGTTTTGGAA
| 16.9 | 0.0169 |
| E14.5 retina | ATATCCATTT (3) TGTTTTGGAA TTACAAAACA (4)
| 25.5 | 0.0255 |
| E16.5 retina | ATATCCATTT (3) TGTTTTGGAA
| 32.6 | 0.0326 |
| E18.5 retina | ATATCCATTT (3) TATTATTTAT (4) TGTTTTGGAA
| 25.4 | 0.0254 |
| P0.5 retina | ATATCCATTT (3) TGTTTTGGAA TTGTCACCTA (4)
| 11.9 | 0.0119 |
| P2.5 retina | AGTTTAAAAC (3) ATATCCATTT (3) GTGGTTGAGG (4) TGTTTTGGAA
| 21.2 | 0.0212 |
| P4.5 retina | ATATCCATTT (3) TATTATTTAT (4) TGTTTTGGAA
| 35.7 | 0.0357 |
| P6.5 retina | ATATCCATTT (3) GCGGGGGGGG (2) TGTTTTGGAA
| 18.4 | 0.0184 |
| P10.5 crx- retina | ATATCCATTT (3) TATTATTTAT (4) TGTTTTGGAA
| 33.4 | 0.0334 |
| P10.5 crx+ retina | ATATCCATTT (3) GCGGGGGGGG (2) GTGGTTGAGG (4) TGTTTTGGAA
| 13.4 | 0.0134 |
| Adult retinal | ATATCCATTT (3) GTGGTTGAGG (4) TGTTTTGGAA TTGTCACCTA (4)
| 11.3 | 0.0113 |
| ONL | AGTTTAAAAC (3) TGTTTTGGAA
| 3.8 | 0.0038 |