| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAAAGAGGCC GCTCTCGGGC TGGGCTGTCT
| 11.4 | 0.0114 |
| Cb medulloblastoma | AAAGAGGCCT (2) ATGAGAAAAA GCTCTCCGGC
| 6.9 | 0.0069 |
| P8 GC+1d culture | ATCCAAAAAA (3) ATGAGAAAAA CAAAGAGGCC GCTCTCGGGC
| 13.7 | 0.0137 |
| P8 GC+SHH+1d culture | AAAGAGGCCT (2) ATCCAAAAAA (3) CAAAGAGGCC GCTCTCGGGC TGGGCTGTCT
| 15.2 | 0.0152 |
| 3T3 fibroblasts | CAAAGAGGCC
| 3.5 | 0.0035 |
| E15 cortex | GCTCTCCGGC TGGGCTGTCT
| 9.8 | 0.0098 |
| P1 cortex | CAAAGAGGCC
| 4.5 | 0.0045 |
| Hypothalamus | ATCCAAAAAA (3) CAAAGAGGCC GCTCTCGGGC TGGCCTGCTC TGGGCTGTCT
| 14.4 | 0.0144 |
| E12.5 retina | ATCCAAAAAA (3) ATGAGAAAAA CAAAGAGGCC GCTCTCGGGC
| 11.3 | 0.0113 |
| E14.5 retina | AAAGAGGCCT (2) GTTCTCGGGC (3) TGGGCTGTCT
| 7.2 | 0.0072 |
| E16.5 retina | GCTCTCCGGC GCTCTCGGGC TGGCCTGCTC TGGGCTGTCT
| 16.2 | 0.0162 |
| E18.5 retina | ATCCAAAAAA (3) GCTCTCGGGC TGGGCTGTCT
| 9 | 0.009 |
| P0.5 retina | ATGAGAAAAA CAAAGAGGCC GCTCTCGGGC GTTCTCGGGC (3) TGGGCTGTCT
| 13.8 | 0.0138 |
| P2.5 retina | AAAGAGGCCT (2) ATCCAAAAAA (3) ATGAGAAAAA CAAAGAGGCC GCTCTCCGGC GCTCTCGGGC TGGGCTGTCT
| 21.2 | 0.0212 |
| P4.5 retina | ATCCAAAAAA (3) GCTCTCCGGC GCTCTCGGGC
| 9.9 | 0.0099 |
| P6.5 retina | ATGAGAAAAA GCTCTCGGGC
| 6.7 | 0.0067 |
| P10.5 crx- retina | AAAGAGGCCT (2) TGGCCTGCTC
| 5.6 | 0.0056 |
| P10.5 crx+ retina | AAAGAGGCCT (2) GCTCTCGGGC
| 11.5 | 0.0115 |
| Adult retinal | AAAGAGGCCT (2) GCTCTCGGGC GTTCTCGGGC (3)
| 16.7 | 0.0167 |
| ONL | AAAGAGGCCT (2) ATGAGAAAAA CAAAGAGGCC
| 7.6 | 0.0076 |