| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GAAAGCAGGA GACTCAGGGC (2) GCAGGGGCAA (2) GCTTTTAATG GGTCACACTA (3)
| 13 | 0.013 |
| Cb medulloblastoma | GAAAGCAGGA GGTCACACTA (3)
| 11.5 | 0.0115 |
| P8 GC+1d culture | GAAAGCAGGA GACTCAGGGC (2) GCTTTAAATG (2) GGTCACACTA (3)
| 12.5 | 0.0125 |
| P8 GC+SHH+1d culture | GACTCAGGGC (2) GATTTTAAAA (2) GCAGGGGCAA (2) GCTTTAAATG (2) GGTCACACTA (3)
| 14.2 | 0.0142 |
| 3T3 fibroblasts | GACTCAGGGC (2) GGTCACACTA (3)
| 17.5 | 0.0175 |
| P1 cortex | GATTTTAAAA (2) GCTTTTAAAA (3) GCTTTTAATG GGTCACACTA (3)
| 31.8 | 0.0318 |
| Hypothalamus | GATTTTAAAA (2) GCCTTTGAAT (2) GGTCACACTA (3) TGGACTCAGG (3)
| 9 | 0.009 |
| E12.5 retina | GACTCAGGGC (2) GGTCACACTA (3)
| 5.7 | 0.0057 |
| E14.5 retina | TGGACTCAGG (3)
| 3.6 | 0.0036 |
| E16.5 retina | GATTTTAAAA (2) GCTTTTAAAA (3) GCTTTTAATG GGTCACACTA (3)
| 9 | 0.009 |
| E18.5 retina | GATTTTAAAA (2) GCTTTTAAAA (3)
| 3.6 | 0.0036 |
| P0.5 retina | GACTCAGGGC (2) GGTCACACTA (3)
| 21.6 | 0.0216 |
| P2.5 retina | GATTTTAAAA (2) GCTTTTAAAA (3) GGTCACACTA (3) TGAAGTATTG
| 12.4 | 0.0124 |
| P4.5 retina | GCTTTAAATG (2) TGAAGTATTG
| 4 | 0.004 |
| P6.5 retina | GAAAGCAGGA GATTTTAAAA (2) GCAGGGGCAA (2) GGTCACACTA (3) TGGACTCAGG (3)
| 15 | 0.015 |
| P10.5 crx- retina | GGTCACACTA (3)
| 14.9 | 0.0149 |
| P10.5 crx+ retina | GCTTTTAAAA (3) GGTCACACTA (3) TGAAGTATTG
| 9.6 | 0.0096 |
| Adult retinal | GAAAGCAGGA GCCTTTGAAT (2) GGTCACACTA (3)
| 24.1 | 0.0241 |
| ONL | GCTTTAAATG (2) GGTCACACTA (3)
| 9.5 | 0.0095 |