| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAATAAAAG (3) GCTGGCCTCT (3)
| 4.9 | 0.0049 |
| Cb medulloblastoma | AAAATAAAAG (3)
| 2.3 | 0.0023 |
| P8 GC+1d culture | AAAATAAAAG (3) GCTGGCCTCT (3) GTAGTGGAGT
| 6.9 | 0.0069 |
| P8 GC+SHH+1d culture | AAAATAAAAG (3) GCTGGCCTCT (3) GTGTGTGTGT (2) TCACACACCC
| 9.4 | 0.0094 |
| 3T3 fibroblasts | GGTGTGTGTG (4) GTAGTGGAGT
| 7 | 0.007 |
| E15 cortex | GCTGGCCTCT (3) GTGTGTGTGT (2)
| 9.8 | 0.0098 |
| Hypothalamus | AAAATAAAAG (3) GTGTGTGTGT (2)
| 7.2 | 0.0072 |
| E12.5 retina | AAAATAAAAG (3) GCTGGCCTCT (3) TCACACACCC
| 15 | 0.015 |
| E14.5 retina | AAAATAAAAG (3) GCTGGCCTCT (3) GGTGTGTGTG (4) TCACACACCC
| 7.2 | 0.0072 |
| E16.5 retina | AAAATAAAAG (3) GCTGGCCTCT (3) GGTGTGTGTG (4)
| 7.2 | 0.0072 |
| E18.5 retina | AAAATAAAAG (3) GCTGGCCTCT (3) GTGGGGGGGC
| 7.2 | 0.0072 |
| P0.5 retina | AAAATAAAAG (3) GCTGGCCTCT (3) GTGTGTGTGT (2) TCCCCTGGCA (2)
| 9.9 | 0.0099 |
| P2.5 retina | AAAATAAAAG (3) GTGGGGGGGC TCCCCTGGCA (2) TCTGATGCAG
| 8.9 | 0.0089 |
| P4.5 retina | AAAATAAAAG (3) GTGTGTGTGT (2) TCTGATGCAG
| 8 | 0.008 |
| P6.5 retina | AAAATAAAAG (3)
| 3.3 | 0.0033 |
| P10.5 crx- retina | GCTGGCCTCT (3)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | AAAATAAAAG (3) GGTGTGTGTG (4) TCCCCTGGCA (2) TCTGATGCAG
| 7.6 | 0.0076 |
| Adult retinal | GCTGGCCTCT (3) GGTGTGTGTG (4)
| 3.8 | 0.0038 |
| ONL | AAAATAAAAG (3) GCTGGCCTCT (3) GTGTGTGTGT (2)
| 13.4 | 0.0134 |