| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAGAAGAAGA CCAACTTCAG (2) CTAAGAACCG (2) GAAATAAAAA TGGGTTCCTT TTTTAGTAAC
| 11.3 | 0.0113 |
| Cb medulloblastoma | CTAAGAACCG (2) GAAATAAAAA TGGGTTCCTT
| 9.2 | 0.0092 |
| P8 GC+1d culture | CTAAGAACCG (2) GAAATAAATA (4) TGGGTTCCTT TTTTAGTAAC
| 4.4 | 0.0044 |
| P8 GC+SHH+1d culture | CAGAAGAAGA CCAACTTCAG (2) CTAAGAACCG (2) GAAATAAAAA GAAATAAATA (4)
| 10.5 | 0.0105 |
| E15 cortex | TGGGTTCCTT
| 4.9 | 0.0049 |
| P1 cortex | CTAAGAACCG (2) TGGGTTCCTT
| 22.7 | 0.0227 |
| Hypothalamus | CAATTTCAGG
| 3.6 | 0.0036 |
| E12.5 retina | CTAAGAACCG (2)
| 1.9 | 0.0019 |
| E14.5 retina | CTAAGAACCG (2) GAAATAAAAA
| 3.6 | 0.0036 |
| E16.5 retina | TGGGTTCCTT
| 1.8 | 0.0018 |
| E18.5 retina | CTAAGAACCG (2) GAAATAAAAA GAAATAAATA (4)
| 9 | 0.009 |
| P2.5 retina | CAATTTCAGG CCAACTTCAG (2) CTAAGAACCG (2)
| 7.1 | 0.0071 |
| P4.5 retina | CCAACTTCAG (2) GAAATAAAAA TTTTAGTAAC
| 8 | 0.008 |
| P6.5 retina | CTAAGAACCG (2) TTTTAGTAAC
| 3.4 | 0.0034 |
| P10.5 crx- retina | CTAAGAACCG (2) GAAATAAAAA TTTTAGTAAC
| 7.5 | 0.0075 |
| P10.5 crx+ retina | CAGAAGAAGA
| 1.9 | 0.0019 |
| ONL | CTAAGAACCG (2) GAAATAAAAA
| 3.8 | 0.0038 |