Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.188851	Pdap1	PDGFA associated protein 1	5		231887
Human Homolog	PDAP1[PDGFA associated protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 81 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAGTGAAGA (2) AAGATGCATT CTCCTCAAAT GTAACCAGAG 34.2 0.0342 Cb medulloblastoma CTCCTCAAAT 11.6 0.0116 P8 GC+1d culture AAAGTGAAGA (2) AAGATGCATT CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG TCTCACCCAC 25 0.025 P8 GC+SHH+1d culture AGCAAAGATA (3) CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG TCTCACCCAC 36.3 0.0363 3T3 fibroblasts AAGATGCATT CTCCTCAAAT GTAACCAAAA (2) 14 0.014 E15 cortex CTCCTCAAAT 24.7 0.0247 P1 cortex AGCAAAGATA (3) CTCCTCAAAT 18.2 0.0182 Hypothalamus CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG GTACACAGCT (3) TCTCACCCAC 16.2 0.0162 E12.5 retina AAGATGCATT CTCCTCAAAT GTAACCAAAA (2) TCTCACCCAC TGGTAGTGGT (2) 33.9 0.0339 E14.5 retina AAAGTGAAGA (2) AAGATGCATT CTCCTCAAAT GTAACCAGAG TCTCACCCAC 38.2 0.0382 E16.5 retina AAGATGCATT AGCAAAGATA (3) CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG TGGTAGTGGT (2) 56.1 0.0561 E18.5 retina AAAGTGAAGA (2) AAGATGCATT CTCCTCAAAT GTAACCAGAG TGGTAGTGGT (2) 47.3 0.0473 P0.5 retina AAGATGCATT AGCAAAGATA (3) CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG TCTCACCCAC 33.5 0.0335 P2.5 retina AAGATGCATT AGCAAAGATA (3) CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG GTACACAGCT (3) TGGTAGTGGT (2) 42.3 0.0423 P4.5 retina AAGATGCATT CTCCTCAAAT GTAACCAAAA (2) GTAACCAGAG 35.7 0.0357 P6.5 retina AAGATGCATT CTCCTCAAAT GTACACAGCT (3) 33.3 0.0333 P10.5 crx- retina AAAGTGAAGA (2) AGCAAAGATA (3) CTCCTCAAAT 13.1 0.0131 P10.5 crx+ retina AGCAAAGATA (3) CTCCTCAAAT GTAACCAGAG 13.4 0.0134 Adult retinal AAGATGCATT CTCCTCAAAT GTAACCAGAG GTACACAGCT (3) 16.7 0.0167 ONL AAGATGCATT CTCCTCAAAT GTAACCAAAA (2) 13.3 0.0133