| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AATGAGAAAA (3) CCTTTAATCC (3) CTTTTAATCC (2) GGAAGGGAAA
| 62 | 0.062 |
| Cb medulloblastoma | CCTTTAATCC (3) TGTAACAAAG (5)
| 43.9 | 0.0439 |
| P8 GC+1d culture | AATGAGAAAA (3) CAGCAGCTTT (3) CCTTTAATCC (3) CTTTTAATCC (2) GGAAGGGAAA
| 36.4 | 0.0364 |
| P8 GC+SHH+1d culture | AATGAGAAAA (3) CCTTTAATCC (3) CTTTTAATCC (2) TGTAACAAAG (5)
| 29.4 | 0.0294 |
| 3T3 fibroblasts | CCTTTAATCC (3)
| 70.1 | 0.0701 |
| E15 cortex | CCTTTAATCC (3)
| 54.4 | 0.0544 |
| P1 cortex | CCTTTAATCC (3) CTTTTAATCC (2)
| 159 | 0.159 |
| Hypothalamus | CAGCAGCTTT (3) CCTTTAATCC (3)
| 23.5 | 0.0235 |
| E12.5 retina | AATGAGAAAA (3) AGGGAGCAAG CCTTTAATCC (3) CTTTTAATCC (2)
| 82.7 | 0.0827 |
| E14.5 retina | AATGAGAAAA (3) CCTTTAATCC (3) CTTTTAATCC (2)
| 123.9 | 0.1239 |
| E16.5 retina | CCTTTAATCC (3) CTTTTAATCC (2)
| 76 | 0.076 |
| E18.5 retina | AATGAGAAAA (3) CCTTTAATCC (3)
| 25.4 | 0.0254 |
| P0.5 retina | CCTTTAATCC (3) TGTAACAAAG (5)
| 74.6 | 0.0746 |
| P2.5 retina | AATGAGAAAA (3) AGGGAGCAAG CCTTTAATCC (3) TGTAACAAAG (5)
| 75.8 | 0.0758 |
| P4.5 retina | AATGAGAAAA (3) CCTTTAATCC (3)
| 45.6 | 0.0456 |
| P6.5 retina | AATGAGAAAA (3) CCTTTAATCC (3)
| 71.7 | 0.0717 |
| P10.5 crx- retina | AATGAGAAAA (3) CCTTTAATCC (3) CTTTTAATCC (2)
| 68.8 | 0.0688 |
| P10.5 crx+ retina | AATGAGAAAA (3) CCTTTAATCC (3)
| 40.3 | 0.0403 |
| Adult retinal | CCTTTAATCC (3) CTTTTAATCC (2) GGAAGGGAAA
| 135.2 | 0.1352 |
| ONL | AATGAGAAAA (3) CAGCAGCTTT (3) CCTTTAATCC (3) CTTTTAATCC (2)
| 93.8 | 0.0938 |