Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.193096	Scd2	stearoyl-Coenzyme A desaturase 2	19	19 43.0 cM	20250
Gene Ontology	endoplasmic reticulum | fatty acid biosynthesis | integral to membrane | iron ion binding | membrane | oxidoreductase activity | stearoyl-CoA 9-desaturase activity
Human Homolog	SCD[stearoyl-CoA desaturase (delta-9-desaturase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 148 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGACTCCG (2) GATCTGCAGG GCGTTCCAGA (2) GCTCTCCTGG (2) GGAGCTGTGG GTTGAAATCT TCAAGTCCAC TCCTGACCCT (3) 81.3 0.0813 Cb medulloblastoma CAGGACTCCG (2) CTCACACCTA GGTTGGAAAC GTCTCTGGGC GTTGAAATCT TATCCCAGGC 138.7 0.1387 P8 GC+1d culture AGAAAATGCT (2) AGTCAGTACT CAGGACTCCG (2) GCTCTCCTGG (2) GTCTCTGGGC GTTGAAATCT TATCCCAGGC TCAAGTCCAC TGTGCCACCA 98 0.098 P8 GC+SHH+1d culture AGTCAGTACT CAGGACTCCG (2) CTCACACCTA GATCTGCAGG GCTCTCCTGG (2) GCTGTGGGCT (4) GGTTGGAAAC GTCTCTGGGC GTTGAAATCT TATCCCAGGC TCAAGTCCAC TGTGCCACCA 105.5 0.1055 3T3 fibroblasts CAGGACTCCG (2) CTCACACCTA GCTCTCCTGG (2) GCTGTGGGCT (4) TGTGCCACCA 178.7 0.1787 E15 cortex CAGGACTCCG (2) GGAGCTGTGG GGCCTGCTGC 69.2 0.0692 P1 cortex CAGGACTCCC CAGGACTCCG (2) GCGTTCCAGA (2) TCCTGACCCT (3) 59 0.059 Hypothalamus AGAAAATGCT (2) CAGGACTCCG (2) GCGTTCCAGA (2) GCTCTCCTGG (2) GGTTGGAAAC GTCTCTGGGC TCAAGTCCAC TCCTGACCCT (3) TCTGACCTGA (2) TGTGCCACCA TTTTCATAGC (2) 77.7 0.0777 E12.5 retina AGTCAGTACT CAGGACTCCG (2) GATCTGCAGG GCGTTCCAGA (2) GCTCTCCTGG (2) GGAGCTGTGG GGTTGGAAAC GTTGAAATCT TATCCCAGGC TCCTGACCCT (3) TCTGACCTGA (2) TGTGCCACCA 88.4 0.0884 E14.5 retina CAGGACTCCC CAGGACTCCG (2) CTCACACCTA GCGTTCCAGA (2) GGTGAAAACT GTCTCTGGGC TCTGACCTGA (2) TTTTCATAGC (2) 69.1 0.0691 E16.5 retina AGAAAATGCT (2) CAGGACTCCG (2) GCGTTCCAGA (2) GGTGAAAACT GTCTCTGGGC TTTTCATAGC (2) 54.3 0.0543 E18.5 retina CAGGACTCCG (2) CTCACACCTA GATCTGCAGG TTTTCATAGC (2) 54.5 0.0545 P0.5 retina AGAAAATGCT (2) CAGGACTCCG (2) GCGTTCCAGA (2) GGTTGGAAAC GTTGAAATCT TATCCCAGGC TCCTGACCCT (3) TGTGCCACCA 33.6 0.0336 P2.5 retina CAGGACTCCG (2) GCGTTCCAGA (2) GCTGTGGGCT (4) GGTGAAAACT GGTTGGAAAC GTTGAAATCT TCCTGACCCT (3) TCTGACCTGA (2) TGTGCCACCA 68.8 0.0688 P4.5 retina CAGGACTCCC CAGGACTCCG (2) GCGTTCCAGA (2) GGTTGGAAAC GTTGAAATCT TGTGCCACCA 57.6 0.0576 P6.5 retina CAGAGCAGGG CAGGACTCCG (2) GCGTTCCAGA (2) GGAGCTGTGG TCAAGTCCAC TCCTGACCCT (3) 45.1 0.0451 P10.5 crx- retina AGAAAATGCT (2) CAGGACTCCG (2) CTCACACCTA GGAGCTGTGG GGTTGGAAAC GTCTCTGGGC 46.5 0.0465 P10.5 crx+ retina CAGGACTCCG (2) GGAGCTGTGG GGCCTGCTGC GTCTCTGGGC GTTGAAATCT TGTGCCACCA 67.1 0.0671 Adult retinal AGTCAGTACT CAGAGCAGGG CAGGACTCCG (2) CTCACACCTA GATCTGCAGG GCGTTCCAGA (2) GGAGCTGTGG GGTTGGAAAC GTCTCTGGGC TGTGCCACCA 35.6 0.0356 ONL AGAAAATGCT (2) CAGGACTCCG (2) CTCACACCTA GGAGCTGTGG GGCCTGCTGC GTCTCTGGGC GTTGAAATCT TCTGACCTGA (2) TGTGCCACCA 24.7 0.0247