Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.195635	Ssbp3	single-stranded DNA binding protein 3	4		72475
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | single-stranded DNA binding | transcription regulator activity
Human Homolog	SSBP3[single stranded DNA binding protein 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 164 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATGGATCCC ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CATTGGATAC GGGCCTGGCC (2) GTGGTTCACA (2) 32.6 0.0326 Cb medulloblastoma AATGGATCCC ACACTTGTTG (3) ACACTTTTTG (2) CATTGGATAC GTGGTTCACA (2) 32.3 0.0323 P8 GC+1d culture ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GGCCTTGGGG (2) GGGGCCCCTT (2) GTGGTTCACA (2) TACAATGAAC TACATTGAAG TATATCATAT TGGTTGCTAG TTCTACTGCC 59.3 0.0593 P8 GC+SHH+1d culture AATGGATCCC ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GGCCTTGGGG (2) GGGCCTGGCC (2) GTGGTTCACA (2) TACAATGAAC TATATCATAT TGGTTGCTAG TTCTACTGCC 60 0.06 3T3 fibroblasts ACACTTTTGT (2) CACACACATC GGCCTTGGGG (2) GTGGTTCACA (2) TGGTTGCTAG TTCTACTGCC 49 0.049 E15 cortex ACACTTTTTG (2) GGCCTTGGGG (2) GTGGTTCACA (2) TTCTACTGCC 29.5 0.0295 P1 cortex ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) GTGGTTCACA (2) TACAATGAAC TATATCATAT TGGTTGCTAG 86.3 0.0863 Hypothalamus ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GTGGTTCACA (2) TATATCATAT TGGTTGCTAG TTCTACTGCC 57.9 0.0579 E12.5 retina AAGGACAAAA AATGGATCCC ACACTTGTTG (3) ACACTTTTTG (2) CATTGGATAC GGGGCCCCTT (2) GTGGTTCACA (2) TACAATGAAC TGGTTGCTAG 60.4 0.0604 E14.5 retina ACACTTGTTG (3) CATTGGATAC GGCCTTGGGG (2) GTGGTTCACA (2) TATATCATAT TGGTTGCTAG 89.3 0.0893 E16.5 retina AAGGACAAAA ACACTTGTTG (3) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GGCCTTGGGG (2) GTGGTTCACA (2) TACATTGAAG TATATCATAT TGGTTGCTAG 99.4 0.0994 E18.5 retina ACACTTGTTG (3) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GGTCAGAAAG GTGGTTCACA (2) TACATTGAAG TGGTTGCTAG TTCTACTGCC 85.5 0.0855 P0.5 retina ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CATTGGATAC GGCCTTGGGG (2) GGTCAGAAAG GTGGTTCACA (2) TACATTGAAG TATATCATAT TGGTTGCTAG TTCTACTGCC 66.9 0.0669 P2.5 retina ACACTTGTTG (3) ACACTTTTTG (2) CAATAAAAAG (4) CATTGGATAC GGCCTTGGGG (2) GGGCCTGGCC (2) GTGGTTCACA (2) TACATTGAAG TATATCATAT 54.6 0.0546 P4.5 retina ACACTTGTTG (3) ACACTTTTTG (2) CATTGGATAC GGCCTTGGGG (2) GGTCAGAAAG GTGGTTCACA (2) TATATCATAT TGGTTGCTAG TTCTACTGCC 71.4 0.0714 P6.5 retina ACACTTGTTG (3) ACACTTTTGT (2) CAATAAAAAG (4) CATTGGATAC GGCCTTGGGG (2) GTGGTTCACA (2) TACATTGAAG TGGTTGCTAG 51.7 0.0517 P10.5 crx- retina AAGGACAAAA ACACTTGTTG (3) ACACTTTTGT (2) ACACTTTTTG (2) CATTGGATAC GTGGTTCACA (2) TACAATGAAC TATATCATAT TGGTTGCTAG TTCTACTGCC 94.8 0.0948 P10.5 crx+ retina ACACTTGTTG (3) ACACTTTTTG (2) CACACACATC CATTGGATAC GTGGTTCACA (2) TGGTTGCTAG 76.9 0.0769 Adult retinal ACACTTGTTG (3) CATTGGATAC GGGGCCCCTT (2) GTGGTTCACA (2) TGGTTGCTAG TTCTACTGCC 61.2 0.0612 ONL ACACTTGTTG (3) CACACACATC CATTGGATAC GTGGTTCACA (2) TATATCATAT TGGTTGCTAG TTCTACTGCC 53.6 0.0536