| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) GAAGAGATGC (3) GCCAGCCTTT (3)
| 210.5 | 0.2105 |
| Cb medulloblastoma | AAAAAAAAAA (2) GCCAGCCCTT (2) GCCAGCCTTT (3)
| 814 | 0.814 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAGCTAGCCC (3) ACAACAAAAA (4) GCCAGCCTTT (3) TACTTGGAAG
| 217.9 | 0.2179 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAGCTAGCCC (3) GAAGAGATGC (3) GCCAGCCTTT (3) TACTTGGAAG
| 293.9 | 0.2939 |
| 3T3 fibroblasts | AAAAAAAAAA (2) GCCAGCCTTT (3)
| 38.5 | 0.0385 |
| E15 cortex | AAAAAAAAAA (2) GCCAGCCTTT (3)
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2) GAAGAGATGC (3)
| 249.9 | 0.2499 |
| Hypothalamus | AAAAAAAAAA (2) AAGCTAGCCC (3) ACAACAAAAA (4) GAAGAGATGC (3) GCCAGCCTTT (3)
| 137.6 | 0.1376 |
| E12.5 retina | AAAAAAAAAA (2) GAAGAGATGC (3) GCCAGCCCTT (2)
| 150.2 | 0.1502 |
| E14.5 retina | AAAAAAAAAA (2) AAGCTAGCCC (3) GCCAGCCTTT (3)
| 111.1 | 0.1111 |
| E16.5 retina | AAAAAAAAAA (2) GAAGAGATGC (3) GCCAGCCTTT (3)
| 56.2 | 0.0562 |
| E18.5 retina | AAAAAAAAAA (2) ACAACAAAAA (4) GCCAGCCTTT (3)
| 382 | 0.382 |
| P0.5 retina | AAAAAAAAAA (2) AAGCTAGCCC (3) GAAGAGATGC (3) GCCAGCCTTT (3)
| 127.6 | 0.1276 |
| P2.5 retina | AAAAAAAAAA (2) AAGCTAGCCC (3) ACAACAAAAA (4) GCCAGCCTTT (3)
| 341.5 | 0.3415 |
| P4.5 retina | AAAAAAAAAA (2) GCCAGCCTTT (3)
| 289.2 | 0.2892 |
| P6.5 retina | AAAAAAAAAA (2) GAAGAGATGC (3) GCCAGCCTTT (3)
| 281.8 | 0.2818 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAGCTAGCCC (3) ACAACAAAAA (4) GAAGAGATGC (3) GCCAGCCTTT (3)
| 67 | 0.067 |
| P10.5 crx+ retina | AAAAAAAAAA (2) GCCAGCCCTT (2) GCCAGCCTTT (3) TACTTGGAAG
| 105.7 | 0.1057 |
| Adult retinal | AAAAAAAAAA (2) GCCAGCCTTT (3)
| 63 | 0.063 |
| ONL | AAAAAAAAAA (2) AAGCTAGCCC (3) GCCAGCCTTT (3) TACTTGGAAG
| 109.1 | 0.1091 |