| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AATAAAAAAA (3) GCCTCAGTGC GGTGAAAAAA (2) GTGGGGAGCC
| 6.4 | 0.0064 |
| Cb medulloblastoma | AATAAAAAAA (3) GTGGGGAGCC
| 13.8 | 0.0138 |
| P8 GC+1d culture | AATAAAAAAA (3) CTGTCTTGCC GGTGAAAAAA (2) GTGGGGAGCC
| 11.3 | 0.0113 |
| P8 GC+SHH+1d culture | AATAAAAAAA (3) GTGGGGAGCC TATAAATTAA
| 7 | 0.007 |
| 3T3 fibroblasts | AATAAAAAAA (3) CTGTCTTGCC GCCAAGGCCT (4)
| 17.5 | 0.0175 |
| E15 cortex | AATAAAAAAA (3) GCCAAGGCCT (4) GGTGAAAAAA (2) GTGGGGAGCC
| 44.4 | 0.0444 |
| P1 cortex | AATAAATTAA GCCAAGGCCT (4)
| 13.6 | 0.0136 |
| Hypothalamus | AATAAAAAAA (3) CTGTCTTGCC GCCTCAGTGC
| 9 | 0.009 |
| E12.5 retina | AATAAAAAAA (3) CATTACACAA (3) GTGGGGAGCC
| 7.6 | 0.0076 |
| E14.5 retina | AATAAAAAAA (3) TATAAATTAA
| 5.4 | 0.0054 |
| E16.5 retina | GTGGGGAGCC TATAAATTAA
| 3.6 | 0.0036 |
| E18.5 retina | AATAAAAAAA (3) AATAAATTAA GTGGGGAGCC TATAAATTAA
| 12.7 | 0.0127 |
| P0.5 retina | GCCAAGGCCT (4) GTGGGGAGCC
| 4 | 0.004 |
| P2.5 retina | GCCAAGGCCT (4) GTGGGGAGCC
| 3.6 | 0.0036 |
| P4.5 retina | AATAAAAAAA (3) CATTACACAA (3) GCCAAGGCCT (4) GCCTCAGTGC GTGGGGAGCC TATAAATTAA
| 16 | 0.016 |
| P6.5 retina | AATAAAAAAA (3) GTGGGGAGCC
| 6.6 | 0.0066 |
| P10.5 crx- retina | CTGTCTTGCC
| 1.9 | 0.0019 |
| P10.5 crx+ retina | TATAAATTAA
| 1.9 | 0.0019 |
| Adult retinal | AATAAAAAAA (3) CTGTCTTGCC GCCAAGGCCT (4)
| 5.7 | 0.0057 |
| ONL | GGTGAAAAAA (2) TATAAATTAA
| 3.8 | 0.0038 |