| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CCTCAGTACA TTCTCTGCTC
| 11.4 | 0.0114 |
| Cb medulloblastoma | TGCACAGGCT (2) TTCTCTGCTC
| 20.8 | 0.0208 |
| P8 GC+1d culture | GCCAAGTGTG TCAGACATCA (3) TGCACAGGCT (2) TTCTCTGCTC
| 12.5 | 0.0125 |
| P8 GC+SHH+1d culture | GGCTGAGAAA TGCACAGGCT (2) TTCTCTGCTC TTTTCTGTTC (4)
| 20 | 0.02 |
| 3T3 fibroblasts | CCTCAGTACA TGCACAGGCT (2)
| 14 | 0.014 |
| E15 cortex | TGCACAGGCT (2) TTCTCTGCTC
| 9.8 | 0.0098 |
| P1 cortex | TGACCCCTGT (2) TGCACAGGCT (2) TTCTCTGCTC
| 13.5 | 0.0135 |
| Hypothalamus | CTTTCCTTTG (3) GCCAAGTGTG TCAGACATCA (3) TGCACAGGCT (2) TTCTCTGCTC TTCTCTGCTT (2)
| 16.2 | 0.0162 |
| E12.5 retina | GGCTGAGAAA TGACCCCTGT (2) TGCACAGGCT (2) TTCTCTGCTC
| 13.2 | 0.0132 |
| E14.5 retina | TGACCCCTGT (2) TGCACAGGCT (2) TTCTCTGCTC
| 20.1 | 0.0201 |
| E16.5 retina | GGCTGAGAAA TCAGACATCA (3) TGCACAGGCT (2) TTCTCTGCTC
| 21.7 | 0.0217 |
| E18.5 retina | CTTTCCTTTG (3) GGCTGAGAAA TGCACAGGCT (2) TTCTCTGCTC TTTTCTGTTC (4)
| 23.5 | 0.0235 |
| P0.5 retina | CTTTCCTTTG (3) TGCACAGGCT (2) TTCTCTGCTT (2)
| 17.7 | 0.0177 |
| P2.5 retina | TTCTCTGCTC TTTTCTGTTC (4)
| 15.9 | 0.0159 |
| P4.5 retina | TGCACAGGCT (2) TTCTCTGCTC
| 15.8 | 0.0158 |
| P6.5 retina | CCTCAGTACA TGCACAGGCT (2) TTCTCTGCTC
| 11.7 | 0.0117 |
| P10.5 crx- retina | TGCACAGGCT (2) TTCTCTGCTC
| 5.6 | 0.0056 |
| P10.5 crx+ retina | CCTCAGTACA TGCACAGGCT (2) TTCTCTGCTC TTCTCTGCTT (2) TTTTCTGTTC (4)
| 9.5 | 0.0095 |
| Adult retinal | TGCACAGGCT (2) TTCTCTGCTC TTCTCTGCTT (2)
| 20.4 | 0.0204 |
| ONL | TTCTCTGCTC
| 9.6 | 0.0096 |