| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CCTTTAATCC (3) GAAAAAAATA (3) GCTGCCCCCT (3)
| 55.4 | 0.0554 |
| Cb medulloblastoma | CCTTTAATCC (3) GCTGCCCCCT (3)
| 43.9 | 0.0439 |
| P8 GC+1d culture | CCTTTAATCC (3) GCTGCCCCCT (3)
| 37.7 | 0.0377 |
| P8 GC+SHH+1d culture | CCTTTAATCC (3) GCTGCCCCCT (3)
| 29.3 | 0.0293 |
| 3T3 fibroblasts | CCTTTAATCC (3) GCTGCCCCCT (3)
| 73.6 | 0.0736 |
| E15 cortex | CCTTTAATCC (3)
| 54.4 | 0.0544 |
| P1 cortex | CCTTTAATCC (3)
| 154.5 | 0.1545 |
| Hypothalamus | CCTTTAATCC (3) GCTGCCCCCT (3)
| 25.3 | 0.0253 |
| E12.5 retina | CCTTTAATCC (3)
| 75.1 | 0.0751 |
| E14.5 retina | CCTTTAATCC (3) GCTGCCCCCT (3)
| 122.1 | 0.1221 |
| E16.5 retina | CCTTTAATCC (3) GAAAAAAATA (3) GCTGCCCCCT (3) GTAATGATGG
| 83.3 | 0.0833 |
| E18.5 retina | CCTTTAATCC (3) GAAAAAAATA (3)
| 25.4 | 0.0254 |
| P0.5 retina | CCTTTAATCC (3) GCTGCCCCCT (3) GTAATGATGG
| 76.6 | 0.0766 |
| P2.5 retina | CCTTTAATCC (3) GTAATGATGG
| 72.2 | 0.0722 |
| P4.5 retina | CCTTTAATCC (3)
| 43.6 | 0.0436 |
| P6.5 retina | CCTTTAATCC (3) GCTGCCCCCT (3)
| 73.3 | 0.0733 |
| P10.5 crx- retina | CCTTTAATCC (3) GCTGCCCCCT (3)
| 65.1 | 0.0651 |
| P10.5 crx+ retina | CCTTTAATCC (3) GCTGCCCCCT (3) GTAATGATGG
| 49.9 | 0.0499 |
| Adult retinal | CCTTTAATCC (3) GCTGCCCCCT (3)
| 133.3 | 0.1333 |
| ONL | CCTTTAATCC (3)
| 84.3 | 0.0843 |