| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAACCTTCTG (2) CAGCCTGAAA (2) GTGTTTAATC TGGTTGCTGG
| 75 | 0.075 |
| Cb medulloblastoma | AAAGAAGCAG (3) CAGCCTGAAA (2) TGGTTGCTGG
| 124.8 | 0.1248 |
| P8 GC+1d culture | CAGCCTGAAA (2) TGGTTGCTGG
| 58.2 | 0.0582 |
| P8 GC+SHH+1d culture | AAACCTTCTG (2) CAGCCTGAAA (2) GTGTTTAATC TGGTTGCTGG
| 94.9 | 0.0949 |
| 3T3 fibroblasts | AAAGAAGCAG (3) CAGCCTGAAA (2) TGGTTGCTGG
| 227.8 | 0.2278 |
| E15 cortex | TGGTTGCTGG
| 277.1 | 0.2771 |
| P1 cortex | TGGTTGCTGG
| 86.4 | 0.0864 |
| Hypothalamus | CAGCCTGAAA (2) TGGTTGCTGG
| 355 | 0.355 |
| E12.5 retina | AAAGAAGCAG (3) CAGCCTGAAA (2) TGGTTGCTGG
| 161.5 | 0.1615 |
| E14.5 retina | CAGCCTGAAA (2) TGGTTGCTGG
| 942 | 0.942 |
| E16.5 retina | CAGCCTGAAA (2) TGGTTGCTGG TTATCAGAGG
| 780.6 | 0.7806 |
| E18.5 retina | CAGCCTGAAA (2) TGGTTGCTGG
| 269.2 | 0.2692 |
| P0.5 retina | CAGCCTGAAA (2) TGGTTGCTGG TTATCAGAGG
| 200.3 | 0.2003 |
| P2.5 retina | AAAGAAGCAG (3) CAGCCTGAAA (2) TGGTTGCTGG
| 174.2 | 0.1742 |
| P4.5 retina | CAGCCTGAAA (2) TGGTTGCTGG
| 154.6 | 0.1546 |
| P6.5 retina | CAGCCTGAAA (2) GTGTTTAATC TGGTTGCTGG
| 165 | 0.165 |
| P10.5 crx- retina | AAAGAAGCAG (3) CAGCCTGAAA (2) GTGTTTAATC TGGTTGCTGG TTATCAGAGG
| 289.9 | 0.2899 |
| P10.5 crx+ retina | CAGCCTGAAA (2) TGGTTGCTGG
| 109.6 | 0.1096 |
| Adult retinal | TGGTTGCTGG TTATCAGAGG
| 220.4 | 0.2204 |
| ONL | CAGCCTGAAA (2) GTGTTTAATC TGGTTGCTGG TTATCAGAGG
| 411.7 | 0.4117 |